Scaffold Ga0074648

Basic Information
Taxon OID	3300005512 Open in IMG/M
Scaffold ID	Ga0074648_1001917 Open in IMG/M
Source Dataset Name	Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300005512 Open in IMG/M

Scaffold ID

Ga0074648_1001917 Open in IMG/M

Source Dataset Name

Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	19973
Total Scaffold Genes	41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	28 (68.29%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

19973

Total Scaffold Genes

41 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

28 (68.29%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Ecosystem

Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location
Location Name	Greece: Etoliko Lagoon
Coordinates	Lat. (^o)	38.4825	Long. (^o)	21.315	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Greece: Etoliko Lagoon

Coordinates

Lat. (^o)

38.4825

Long. (^o)

21.315

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005315	Metagenome	405	Y
F020467	Metagenome / Metatranscriptome	224	Y
F028356	Metagenome / Metatranscriptome	192	Y
F037128	Metagenome	168	Y
F104763	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074648_100191712	F005315	N/A	LTNLAQSGASEYLITTQVEQAVKLKPDLIVIGHTSEYRWQVWDFRNNCIQGFLVANWIEKHGKSYRNWIFSEQIIGNRRKDTREHKAAWHAAGMLYYSEHELVKRLWSSAVARQIVLCQRAKIPVIHHCCFSHLQTTLEELTDDHVTYHLDKEKYKNFAPDNSHAGARCHLELARLIMNKHQPIL*
Ga0074648_100191719	F037128	N/A	MTRRIKKPLKDFFDNHSLTDAEKSFILGCIQAQNKFPQLTHRQWQIVCEIKERYKNVKISRSEEITKR*
Ga0074648_10019174	F104763	GAG	MPSYKVVLFSDSIHQQYMIDQELAINLALPQVTTEQADYTDSRLALYSPTPTRVPAIIIFKDGARLQVKHAKRGHDKIVTWIQSIVGA*
Ga0074648_10019176	F020467	AGGA	MHKRPTLQEAKLFLTQHSPDTMREYEQLVDSHGEFFAARFIVDIVDHFNHLQEVAANG*
Ga0074648_10019178	F028356	GAGG	MFFKLTSRNAYRDLIRNARRISIAAISDSEKSEAFQELFKLLQGKLDETERSLNSQPAYAQRCEHWNQRDVKSIKRVTTERNPWLCFKREFVDAMSQGAEIHAKRVSCALAWFYATPYRDDWIR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0074648_1001917

Overview

Ecosystem & Geography

Associated Families

Sequences