Scaffold Ga0074648

Basic Information
Taxon OID	3300005512 Open in IMG/M
Scaffold ID	Ga0074648_1001828 Open in IMG/M
Source Dataset Name	Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300005512 Open in IMG/M

Scaffold ID

Ga0074648_1001828 Open in IMG/M

Source Dataset Name

Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	20934
Total Scaffold Genes	35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (57.14%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

20934

Total Scaffold Genes

35 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (57.14%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Ecosystem

Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location
Location Name	Greece: Etoliko Lagoon
Coordinates	Lat. (^o)	38.4825	Long. (^o)	21.315	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Greece: Etoliko Lagoon

Coordinates

Lat. (^o)

38.4825

Long. (^o)

21.315

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002182	Metagenome / Metatranscriptome	586	Y
F005467	Metagenome / Metatranscriptome	400	Y
F008222	Metagenome / Metatranscriptome	337	Y
F010653	Metagenome / Metatranscriptome	301	Y
F018079	Metagenome / Metatranscriptome	237	N
F028616	Metagenome / Metatranscriptome	191	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074648_100182812	F008222	N/A	VKKFYSIRLKHHREFIPVTVAQDMMKAESELVQYLSDNGALEFRYIKSRDRLDLYADEKYLTMGRIKYPDMFGGRGQMGFMELYISRLINQKLQLAKGSS*
Ga0074648_100182821	F018079	GGAG	MYTLEKRKMIYIMTRKPVWYHTHCITPWRGTPVWYDPTWVVGNCELCRMDIKNQDWWNNCTYDNSQRKLFDLLDMELVRCGDYFS*
Ga0074648_100182828	F002182	AGGA	MIYTEQEHEWLSAPKKRRVSNQTRDGRPPQAQDYRKHDWAIRTTIEVDGREYVVPVQV*
Ga0074648_100182829	F010653	N/A	MLLRTASLYMIMTVSAVAFHDNTFAVFDLREQLQMLYINMWELLTQLEYVTPDQRVVVYEEIAHIRSEIVRVITELLAHDQRQHP*
Ga0074648_100182830	F005467	N/A	MSEPRYYYVMCEKGPVTHRCYVRMDPASADVLHDSLCERHDLVQVCDVPESEIESDLLIDPAP*
Ga0074648_100182832	F028616	AGGAG	MPILSPQAYLNLKASVKHKSYRVYRKYHRPVTFRTYGQARAYCIKHSLNYKSSWVLTTVNHCA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0074648_1001828

Overview

Ecosystem & Geography

Associated Families

Sequences