Scaffold Ga0074648_1001719

Overview

Basic Information

• Taxon OID: 3300005512
• Scaffold ID: Ga0074648_1001719
• Source Dataset Name: Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 21970
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (97.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002322	Metagenome / Metatranscriptome	571	Y
F002542	Metagenome / Metatranscriptome	550	Y
F015461	Metagenome / Metatranscriptome	254	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074648_100171914	F002322	AGAAG	MAEKLPYSKNVEKHILECIQGGVAIRQMLASMQHLQGAPRSLSTMYKIYGSFIETERAKINGMVGKKVIDQALEGDFKSQELFLRSKGGWSPTQTNIEVEQETDPDLDESAADTLLTLLGMNDDPTEQEDNG*
Ga0074648_100171923	F002542	AGGA	MHPTYLGWQVDWPVFIKRPLMADSKTWSQGEHFNWLERGIDQDKVATLYASGYIHHNKELEVQTKVGDRLSELSGKQLETLVNLLNAEVKARTSSTSEFETKKCKKSKIDDKQRGLIRRFLNNNRWVTEDFYTIRDKILND*
Ga0074648_10017199	F015461	GGAG	MEIMIKEIEAIMYDVIEVSFRAGEYRRDIDRGINANSTAEAEGYPKAKTIENLLSYLTDAKHDMDRVQDDLKEIKDKLDDLLNVVDYEAVAKEIRK*