Scaffold Ga0074648_1001671

Overview

Basic Information

• Taxon OID: 3300005512
• Scaffold ID: Ga0074648_1001671
• Source Dataset Name: Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 22438
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (72.92%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029401	Metagenome / Metatranscriptome	188	N
F042576	Metagenome	158	N
F048280	Metagenome	148	N
F055692	Metagenome	138	N
F084117	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074648_100167110	F084117	AGGAG	VSNLKDIMIDAQATAQCLIHGEGYTYRMFISTMKEDHPACPSDYFDTLWNEEMKERWEKTLSLKGLMRSKRK*
Ga0074648_10016712	F029401	GAGG	MSEAKVNDKTTFNISISYLVQIIIAIAAFVYGYASISEHIDNNSREIKNIRGNQNNYIFPDIRMLEEKVIILEKEVLVLQKEIEFRKKEIQAMKQEKSDFEN*
Ga0074648_100167123	F042576	AGGAG	MANKTATQKSMLSSAKTQTETATTTPKIKFGKYSPDAKLKATGKRVTAEHNNERVKAVNGKTIKEAIATGLYTMSGIRYDIEKVKTLEIA*
Ga0074648_100167136	F055692	N/A	MPKQHKSIEFLCFTALDYSRVVKVDMAELHTIVQGYQRIGDPAFMSHQNTITPESKALEIYNRFAKRKLKNFKNKKDCQIKLWNLFSKMAVKPEETDMSRSKVFKIDRSKPKPDPLCKVISARDPYDTSQKLTRTNKMPMASKNIERMKQYENIKTIQDVLDKGVLDIRAIKYDIKLGYVTKG*
Ga0074648_10016714	F048280	N/A	MRDYLKSITEVCPFSLKHFDNGEIPILHYSEPLVRELYEELDKYPAILFKVHSTVCRHVLESTAHELADEYPEAEWFWSHPSEGGTSTLVPVLIMQNREHLAKARKEFKLMRNG*