Scaffold Ga0074648_1001542

Overview

Basic Information

• Taxon OID: 3300005512
• Scaffold ID: Ga0074648_1001542
• Source Dataset Name: Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 23768
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031706	Metagenome	182	N
F038473	Metagenome	166	N
F044465	Metagenome / Metatranscriptome	154	N
F089549	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074648_100154213	F044465	GGAG	MMTLDKAKSLMKGPNYMEEMVMETLKASDLSLIPEKMEVDWDDEELLEAFQIAQSQIHLKNYRLANSVLLFCHRLLKERYE*
Ga0074648_100154215	F031706	GGAG	MIEGYLEDMIMERKVGVSLQEIQNLYCVMTWQVYLRLLQEDRRDSVPADLVEAAERYVIAFNEWDQQRNLAD*
Ga0074648_100154218	F038473	AGGAG	MDLGFSIEIEYPKEMIQTSPLPPGEHMVEIQYIGSKPTKSGGWMLNMKLANDHGHVWDNFNIGHASETTRQSAQKKLGRVARCSGLEGSFCNTDDLLNRTVAVELGLNQNGYIEVLKYKEKLSQVPVMDTDDDEPEF*
Ga0074648_100154225	F089549	GAGG	MAINLNKLNEPSYQEVADKYCNGILCGIADDLEELENARNEPDGQKIEEIYERLNDCLDIEVVKTVEILISTGGPACKIVIDQNRKPSIWYQDWYKPWKQAQLNQAKRDVLEEYVETAFGWYLDEQLEEA*