Scaffold Ga0074648_1001411

Overview

Basic Information

• Taxon OID: 3300005512
• Scaffold ID: Ga0074648_1001411
• Source Dataset Name: Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 25282
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (65.12%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024563	Metagenome / Metatranscriptome	205	N
F048332	Metagenome / Metatranscriptome	148	N
F077338	Metagenome / Metatranscriptome	117	Y
F082724	Metagenome / Metatranscriptome	113	N
F086331	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074648_100141130	F082724	GAG	MATANGTKLWLEEGIVHAGKMLQDLIKVEEFRDLSPAEKKIKTVSATYCYLYSKLKELDLLIDSEDNIFPDETIH*
Ga0074648_10014114	F024563	AGGA	MQIIYTTKKDLIKQIESKGLSPLSMNATIEDFKKYLKALNVEAKRKEVVKNVT*
Ga0074648_10014116	F048332	AGGGGG	MEILKSIKLRQLRKERELIQANKKAWINSHADTVIDASLSRTFLAYQNAINKINYAIRNLQND*
Ga0074648_10014117	F086331	AGGAG	MKINKMSKEDLIKSIEKAENLLNNKRWKKQQTKFWIGVYINHLAKLRNELLKRG*
Ga0074648_10014119	F077338	AGGA	MERKILQVVNLSPSESWVEKLTHIHPMKQIIWASIIQVTMFFSMLGMFQINSWIFGH*