Scaffold Ga0074648_1001275

Overview

Basic Information

• Taxon OID: 3300005512
• Scaffold ID: Ga0074648_1001275
• Source Dataset Name: Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 27284
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (96.97%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008550	Metagenome / Metatranscriptome	331	N
F010004	Metagenome / Metatranscriptome	310	N
F012087	Metagenome	284	Y
F016344	Metagenome / Metatranscriptome	248	Y
F017474	Metagenome / Metatranscriptome	240	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074648_10012751	F010004	AGG	MTDPIITVGDQAKKILQEDAVRQAFDDLKTNLVQQWISGKSPDERESCWNAYHAVVNLHNELSAQVQRSIRRKKQTKTEE*
Ga0074648_100127515	F017474	GGAG	MEFMELLNSAIESGGVELVLTAIGLPMAAAGVGVYRKVRKAKQLKEKIIG*
Ga0074648_100127523	F012087	AGGA	MTEIELDEIKSDLREIKEMMRVISKQVAADQEVAAVRTLRKLEESRISKQIRQMSELAD*
Ga0074648_100127526	F016344	GGA	METTTEEKLNDRFEAFKAETARMGRAYWVSVRRAEERSKEIRQSYTAVYQCPACGLFRPADHSRDCRDLRPVDLSMSEKIHWRDHGTDWNWDYQATIE*
Ga0074648_10012754	F008550	GAG	MESKAILDHRGDVLTQFHADEDHAGNLQLRTTVSQNIDPTLKLVKELRDNQHLDPFANKQSGWKRVAEIPVVLWDQLERQGITRDKKKLKAWLNDFHNKPFRVWEGHL*