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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300005512 Open in IMG/M |
| Scaffold ID | Ga0074648_1001168 Open in IMG/M |
| Source Dataset Name | Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 28976 |
| Total Scaffold Genes | 43 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (30.23%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium TMED167 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Greece: Etoliko Lagoon | |||||||
| Coordinates | Lat. (o) | 38.4825 | Long. (o) | 21.315 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F015281 | Metagenome | 256 | N |
| F019473 | Metagenome | 229 | N |
| F078662 | Metagenome / Metatranscriptome | 116 | N |
| F101060 | Metagenome | 102 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0074648_100116822 | F019473 | N/A | MKKWIELAFLCTAIITLSGCSTLEKATGWALEQDVQTQIVDGKEITSTNWVVRPSVENGLRITGSIIPGAGGFLSEGIIAALAAFAAYRGRQWKKAAVDAVDAGQQFKRALDKTNGKAKIADIVSGLKTQQKSNGTFAFIKSILEKI* |
| Ga0074648_100116841 | F078662 | N/A | MASDITAFLNLQSDGYLLTLKERVADAILAGSVTVSFSNASQSGSMQLVMPTDELAAQLTTVLIAKGLANGATKPTRMTFARFAR* |
| Ga0074648_100116843 | F015281 | N/A | GFRARPRTKAMTKPAKPTRKKTSSPPPLLTIADVAQKLDMSYHEARNFLVRVPIAKTGARGAHLYTLEAVTEARKTSANESGNEAQPGTKEWHEVEKIRRQVEKLDVELDGMRGKMLDREEVKRATMALCMEFAKHLDEMESKLAPMVAGLTPTEAQPVIIAYNAKLRETLRAHTKA* |
| Ga0074648_10011687 | F101060 | AGGAG | MKTKYCGGCDKTKLVNDFARNKLAPDGRQYHCRQCMNAYSVIRKAAIKEGTWRK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |