Scaffold Ga0074648_1000810

Overview

Basic Information

• Taxon OID: 3300005512
• Scaffold ID: Ga0074648_1000810
• Source Dataset Name: Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 36467
• Total Scaffold Genes: 71
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (38.03%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002985	Metagenome / Metatranscriptome	515	Y
F003687	Metagenome / Metatranscriptome	473	Y
F022857	Metagenome	212	Y
F043349	Metagenome	156	Y
F073444	Metagenome / Metatranscriptome	120	Y
F090274	Metagenome	108	Y
F105075	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074648_100081031	F002985	N/A	VSYIIATWKNGVPHAISACRNTGQFQLLPLDSDVALNKIYSHPYRAGAQQILAWINKNDKQLAGQELSIQDEARFRK*
Ga0074648_100081040	F073444	N/A	MNCHQHAVKDFDLQIEMNELEMGMLNEANGEVLPYNESRMDELEQKKLKLLMGKRYNQNATNAYWYYLERSSK*
Ga0074648_100081042	F022857	N/A	MDAITVPKLTVSFAVDLELDYDSFGGKTPEEIAASLQDEMDDLLFEVSSSVVGVYTSITAINSDD*
Ga0074648_10008105	F105075	GGTGG	MMIYQPSSDMNYRVVWYGGESIQLHFEKQIFSGEWRAIDTRTLQYSFPTGVKELLLEMEDYYHHGLVLEEEYHQSMTA*
Ga0074648_10008106	F003687	N/A	MTPNVVEQLLTQDARLLARRDSPVIDQELEKQRQVALDLFFQWQDGMRQFKDLMPFCVVLQRKVDLNKDLLRWERKHGY*
Ga0074648_100081068	F090274	N/A	MGSESIQVATSKEDWDDFFAEWDDPQNAIDSMDSYADRVRVACELSGRQIQKANQRLDESTQEKIRITIEFEFDR*
Ga0074648_100081069	F043349	AGG	MNQRKKKSVSRLSSNLTGKFGPRTQAIAIRQVRQWVDELPAGDMIALRCESALPDKQFRVWKKWFTKHEDIRWEIKEKFKAFWFYKSAPIE*