Scaffold Ga0074648_1000683

Overview

Basic Information

• Taxon OID: 3300005512
• Scaffold ID: Ga0074648_1000683
• Source Dataset Name: Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 40969
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (71.88%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009762	Metagenome / Metatranscriptome	313	Y
F037431	Metagenome / Metatranscriptome	168	Y
F042637	Metagenome / Metatranscriptome	158	Y
F059370	Metagenome / Metatranscriptome	134	Y
F067686	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074648_100068312	F009762	AGGA	MRSWNDKKHMKKIWHKNFFIETDFKVDPGFWDDYFNGKWEDSNKLYSEYVDEATGGKKMNRFFVQEIHNFDRKLLRLIKNIWNTFGFRPHEFRCNFFRVLEGGELPVHVDQKSKCSFVIPITENTGELYFDDGRDKDSILYDSMVVLNTKKPHGVRSPSKERIVFHMGIHDVGFEELQ*
Ga0074648_100068321	F059370	GGTGG	MIDVYCVNVGTKYTRDFDKKLKNSVAEHLTLDHTFRCLTDRPEKEYDIPVTHPELRGVFHKLSLFQYTGNCLFFDLDILINDNIDFLASEFDRLTLVNSSPWKQQSLKEPLKFRITQNTLVNSSIMRWTDERKVFEKFMKHRDLYVRLYSGIDRFIYNEEIKYKYFVGDAISSWQEGVKHNTILLHNQKYV*
Ga0074648_100068322	F042637	AGGA	MAIFSGKIIEAYFANSENNTVEVIYEDGKRAINHYLPVDYNNEDFKDLISEYNTDKIAEATIARNRKYAQQLSDLVDQGIKSKTDVKQRISIEDFVECILKFDPNDTQCKEMLFTTKVEIFETEKVKGSTDKEKKSQLRSAKTPLELLVAYNNFDD*
Ga0074648_10006835	F037431	GAGG	VKYKTDRPFSQEELLNMDIIHDPNTTMFKDQNDESYVVEDFINDAECDLLSAFFKDNFDRIGININDHVLHITYPMAISDIDDIVRPKIYEHFGDDIVFYSDIATDDPISVGDQFFKSVKPYGLHTDAVTHLNGYRPYKDIIIPVELDKIVESEYVTFNQRYRGRATHFMRGRHIGSFANYANVIRHQSYEEYGVENLEHNERDQQILKDIMPAHIPMSIYEGLSIEKVLPWRPRCAIIHDASVLHAPVDYRKHGCGYKIGLTLHLMKKDPYYNNRLVGYYTPFSRYTKPLIPA*
Ga0074648_10006837	F067686	AGGGGG	MPSNLSHYELPEFLDSEVKDRLLRIGMDLKDEDWTTHKSTRTGKPTVLNFYDLNMTFHGRNCYLLMIRPNAVQEWHTDGGRRNTALIYPLSEDYAPCSFEHAEISKPMFLNTQVRHAVFNNSNKRINLNISFEEDIEDCIEFYKCLKFFKGAHAYEFDPS*