Scaffold Ga0074648

Basic Information
Taxon OID	3300005512 Open in IMG/M
Scaffold ID	Ga0074648_1000677 Open in IMG/M
Source Dataset Name	Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300005512 Open in IMG/M

Scaffold ID

Ga0074648_1000677 Open in IMG/M

Source Dataset Name

Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	41266
Total Scaffold Genes	67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	62 (92.54%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

41266

Total Scaffold Genes

67 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

62 (92.54%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Ecosystem

Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location
Location Name	Greece: Etoliko Lagoon
Coordinates	Lat. (^o)	38.4825	Long. (^o)	21.315	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Greece: Etoliko Lagoon

Coordinates

Lat. (^o)

38.4825

Long. (^o)

21.315

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001153	Metagenome / Metatranscriptome	764	Y
F008816	Metagenome / Metatranscriptome	327	N
F016477	Metagenome	247	N
F036708	Metagenome / Metatranscriptome	169	N
F039144	Metagenome / Metatranscriptome	164	N
F047386	Metagenome / Metatranscriptome	150	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074648_100067728	F008816	GGAG	MLFYTVLVLSYTLNGDYLQAKTIFPSARACGDALPAYYEPVYDLDRNAIGQCLKTEVISASIKPKRKPL*
Ga0074648_100067736	F039144	AGGAG	MLFKMSREYFCECCEFYKTFEEMHGDNDTICAVCQEGQEEWEYINSNEEEE*
Ga0074648_100067737	F016477	AGGAG	MENIIKQIRDIESDLQTAVCRAEEYRNDAERGINYNHTCEGDMSWTKQDKINSLFEYLEDAKNDIDRLKDDIKEAKKHLTNLLDDVEYESVRQRAVGES*
Ga0074648_100067742	F001153	AGG	MSVHDKIPYSEVIAKKVREGIRSGVSVKDILSSIQKYQNSPSSTATFYKLYGEDIAEEKASIVGAVGSVVVQQALDGDFKSQELFLRSKGGWSPTSTVNEVDQVEDPDVDESAIDSLMTLLGKTRDNSPDA*
Ga0074648_100067756	F047386	AGG	MIRQENMPFQLDRPVFVKYPFQSWGRVLQKGDEFKWKEIGVTEEKALILYKQGFIYHNPEFEVELKVGDGLEQLDIAGLHGLVDSINAKVKSKTPSEAEFQKKKCKKSKIVDKQRGLIRSWRRNYGHMET*
Ga0074648_100067759	F036708	GAG	MKTTLKVLPSLKRKLGSLESLVEQQVERKLVDIAETAVTLSPVDTGAYVTSFSFSVGRGRPRGKSSRGRLKGNEQAMRQEGLDNLKNDLKKIPSLMDTTSITLRNNSPHATAVEYGGKGWITPPYFVFTKLRNIHG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0074648_1000677

Overview

Ecosystem & Geography

Associated Families

Sequences