Scaffold Ga0074648_1000623

Overview

Basic Information

• Taxon OID: 3300005512
• Scaffold ID: Ga0074648_1000623
• Source Dataset Name: Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 43687
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 44 (75.86%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000479	Metagenome / Metatranscriptome	1092	Y
F001689	Metagenome / Metatranscriptome	651	Y
F002859	Metagenome / Metatranscriptome	525	Y
F004549	Metagenome / Metatranscriptome	433	Y
F007093	Metagenome	358	Y
F007401	Metagenome	352	Y
F025390	Metagenome / Metatranscriptome	202	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074648_100062322	F000479	AGGA	MSKAVNILEVLEKAHESKARISKRNKQAIIDAYGRALTMQKVLADFIKVNRQLMIDLAFGENANLLHGKDYSLHVQQKLGAKIDNTLVKEKLGELEYHKCKVPTEYKTIQAMPLSESTISRNKKATIDEVADFRITA*
Ga0074648_100062326	F002859	GAGG	MLVIVRPDLYQYSPLPMTDDLFWRRVENLRRAALTAENFEFRLLYYNQMVELMKRCP*
Ga0074648_100062330	F007401	N/A	MSDQEILKQRDLLDAILASRTNKYERIQSMEVMDSIYFREKLPENVVLFPLQRIKRYVHQTTRKPSKKSL*
Ga0074648_100062336	F004549	GAGG	MNTKKFKSVAVAIETYKLLKKIAAADDRSAGMQITYLVKQEAKKRKLAA*
Ga0074648_100062338	F001689	N/A	MKLKKEYEMTFKEGFRLGVRLTRAKAYIENARDAKRLGDETMAELYTEFAQEWNDLARNAGRKFTPSAAHEPEQSAFDFGDIEYQEHLSKLPFKETA*
Ga0074648_10006234	F025390	AGGAG	MTTHFNNGVTNVVKDKSPLKNAMMPDPFPVTNTQGAGYDFLGQTSYMDDFYSFITRTNTSNNGRGSPGWYVSQTASTQTCAPIADAHGGWLQLDEVNATDDAYNQINSFTAYQLSTKMNFGFEARVAVEDVSTTEMVIGLVDTDTTSQVVNITDGVYFSNFADPTSITAGTGWYLHAEKNGTVTSSDALVDPYTGDTFVIEDGALQTASATQLATPSNSFICGFNIIPQGSNGNVNTAVIQAYLGPVGKQPKPVASIATTNLPDDLAMGIIAGTKNNTTTASIMWVDYVKVISSRSFSGSTTK*
Ga0074648_100062340	F007093	N/A	MFSVPGMPSVKHQAELYFNQDICENRRVIIENNVYQRAEEVGINPVYVQTWCLESNMFVENSS*