Scaffold Ga0074648_1000577

Overview

Basic Information

• Taxon OID: 3300005512
• Scaffold ID: Ga0074648_1000577
• Source Dataset Name: Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 45717
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (85.48%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026308	Metagenome	198	Y
F044147	Metagenome / Metatranscriptome	155	Y
F066154	Metagenome	127	Y
F068222	Metagenome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074648_100057749	F068222	GAG	MRKMTVIAEISVKTLVDLDVLEDLIEDVILEALHQDEEVEVKVTAEFVKVAK*
Ga0074648_100057750	F026308	GGAGG	MDKYFQTLDMAAFRMMLEPDSDKAMKLYRHVLNSQHDAGPEADYIIRLWKKERGINAKDDSNS*
Ga0074648_100057759	F044147	GGAGG	MTALEDIEEAIETMEASLATDFMTNAVRDIMSTAVQRLKDAKEKLTD*
Ga0074648_10005777	F066154	GAGG	MKDMSRIKKVESPTKSIKSGPTSPELIRRTMGGEIKVIKARGAGAATRGFDFHEKV*