Scaffold Ga0074648_1000392

Overview

Basic Information

• Taxon OID: 3300005512
• Scaffold ID: Ga0074648_1000392
• Source Dataset Name: Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 58585
• Total Scaffold Genes: 90
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (53.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004169	Metagenome / Metatranscriptome	450	Y
F016800	Metagenome / Metatranscriptome	244	Y
F025022	Metagenome / Metatranscriptome	203	Y
F054801	Metagenome	139	N
F102116	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074648_100039218	F025022	N/A	MKDLTIVAIKREDGLYHFNHSHNDTVEELLMNGTEEAIDEHYYFATAKHPMEGDEVEISLYLKEPDDYDTLLLKEVSDEDGTTYTDTTLCVPVWLCNWNQGYFGFVPEEIYVKVKPINKGLEAFVERTGMRQFLN*
Ga0074648_100039234	F054801	GGA	MKKRKVRFINHKYTDIFDPNQILTVKEMIPYAWHENFTFEEVEGEYSTIFFEDVEK*
Ga0074648_100039238	F016800	N/A	MLDAYTDYPIEKLDDTEFEKAPIRKCTILTWDRNKYCDVLVYFVDEDGDLRGHITNFKQFYLYKNEARLDDGVQFTDDELNTLSWRYL*
Ga0074648_100039240	F102116	GGA	MTNLINKLLAFFNLKLVSTKINTSLVKESVKFLDKHKDYWNDDIFFPPYIGDINYVQEKVKGEFPQVSGKTYIQQTGTETKYYDYDGDTYTTMDLCLIQDGVWTND*
Ga0074648_100039282	F004169	N/A	MTDEELKLVLAKYKQKSFELFNKNIVLETQVETLTSTVNSLSAEVEKLKKPKRGLKTEGDFE*