Scaffold Ga0074648_1000373

Overview

Basic Information

• Taxon OID: 3300005512
• Scaffold ID: Ga0074648_1000373
• Source Dataset Name: Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 59854
• Total Scaffold Genes: 89
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 75 (84.27%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003219	Metagenome / Metatranscriptome	500	Y
F017559	Metagenome / Metatranscriptome	240	Y
F084263	Metagenome / Metatranscriptome	112	N
F096921	Metagenome / Metatranscriptome	104	N
F100735	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074648_100037322	F100735	AGGAG	MHYVELQQPKHITSLATSAVLVSVDVNVWSATKQDRGISSEVTKLKRADSNAGRFVKNLLANNIYHKDLVNYRQTIYNWLKRSTYRWNVSQDLLPTINLEKFKSEYDEHQTEFYRLLDDFCDRYDTIKSNMAFSQGDMYNADDYPSVDEVKSKFACNLYVSEVPEQDFRCQVAQDLANDLKLQYQKQAEEIVKNVLHQQTERITNVMESIAHCCGTQEITKDGKTTTKKRKIYDSTIEKAKELCETIRNFQLTDSEHSTRLRSVANQLDDTLQGVDSEKLRVSDSTRERVKNDVEDILSKFQF*
Ga0074648_10003736	F084263	AGGAG	MIDGTLKLLAEKIEEERKIILESLGDGHAQDFAQYQNSAGIIRGLMIAQRHIADLAKNMEDDDE*
Ga0074648_100037361	F096921	AGGAG	MARKIIPVATPNLIVAPNEYSKSREEQLNNELRLYFNRLNGNINTIADTAGGASISFPHIVAYSDADQIAGGDDTPTLVAFNNVADNVGFTFNTDGTANALFDGTYKIEYRLQAVNTANVALDAVVWLQVNGEDVPDSATKYTLPARKSAGVYSFTILASFVSWESLENDKFALYWATEQAYESGVQDGIYLEATAAQTSPYAHPEIPSSYGVIQYIGRE*
Ga0074648_100037373	F017559	GGAG	MIVDAKEKNGIIVNKYETHLECANCGMEVDAEEYNSGTCSDCGTAWDGKKHMAIHVTSVPASGQTS*
Ga0074648_10003739	F003219	N/A	MLQFNLLAAISRCKQRHMTENREPIVPPVEENIPLPKGARDALPELTPQEELLARSKTIKLIADLNGETIEPTKDQVDEATKMAKEMMTDRDLKHEFDNYPNETIAFLTGLVASTSHMVVKDLADIKLSVLNGLLQEAATAKSARERISAWSRIGEIDGVDAFKKKTEVTHVTKSGKELEEELKKTIEELKGKVVEGEVIEDDDDQ*