Scaffold Ga0066825_10020589

Overview

Basic Information

• Taxon OID: 3300005510
• Scaffold ID: Ga0066825_10020589
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV45
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2265
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013639	Metagenome / Metatranscriptome	269	Y
F101490	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066825_100205891	F101490	N/A	MITMKNYLEETLDKQLKVYRDYESSIEKQWGGKKRLLKCVDTQLEIKFCKAQMLFDETLIEGHTKKKIEMIQMMYRAYKALVDKAKANGYRELEDDFRCYKYRNNKIAIVCDMDAQIPRLKELYGSDKDVVLFSVEELFRFMHPDYLDAKETFKQKNMDITFKRVSFV*
Ga0066825_100205895	F013639	N/A	MKINKDKLEQKIKQGKSSHDIAMTYDVHPSTVRRKAKQFGLKFATQTHWRKR*