Scaffold Ga0068912_10071441

Overview

Basic Information

• Taxon OID: 3300005506
• Scaffold ID: Ga0068912_10071441
• Source Dataset Name: Soil microbial communities from Colorado Plateau, USA - Soil Crust after dry out 3A (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2240
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Desert → Soil → Soil Microbial Communities From Four Geographically Distinct Crusts In The Colorado Plateau And Sonoran Desert

Source Dataset Sampling Location

• Location Name: USA: Colorado Plateau
• Coordinates
  • Lat. (^o): 38.42
  • Long. (^o): -109.4099

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035160	Metagenome / Metatranscriptome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068912_100714412	F035160	GAGG	VIVQQDFTGSEQSRSKAIAQAWLSGVPEGTMIGEMPLPQKPDDLTDEQITDWLEGRAEIAPGLAPKSC*
Ga0068912_100714413	F035160	AGGA	MSVVQQDLTASEQSMSKAIAQAWLSGVPEGTMIGDLPLPAKPDDLTDEQISSWLEGRAEGFPGGTIPASCP*