Scaffold Ga0074230_1193161

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0074230_1193161

Scaffold Ga0074230_1193161

Overview

Basic Information
Taxon OID	3300005504 Open in IMG/M
Scaffold ID	Ga0074230_1193161 Open in IMG/M
Source Dataset Name	Poplar biomass bioreactor microbial communities from Brookhaven National Lab, NY - total biomass decay community
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	507
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Wood → Composting → Bioreactor → Poplar Biomass Bioreactor → Poplar Biomass Bioreactor Microbial Communities From Brookhaven National Lab, Ny

Source Dataset Sampling Location
Location Name	Upton, NY
Coordinates	Lat. (^o)	40.869444	Long. (^o)	-72.886667	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000911	Metagenome / Metatranscriptome	840	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074230_11931612	F000911	AGGAG	MSISMDRFVSKGGFASYDPHQNQPQRVAIFQLQCRCCGYEPEDPVVAPRVCPKCHSTSWERFARPGSILDNAQRY*

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