Scaffold Ga0074210_116491

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0074210_116491

Scaffold Ga0074210_116491

Overview

Basic Information
Taxon OID	3300005481 Open in IMG/M
Scaffold ID	Ga0074210_116491 Open in IMG/M
Source Dataset Name	Sediment microbial communities from Lake Washington, Seattle, Washington, USA - Methylamine enrichment
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Finished

Scaffold Components
Scaffold Length (bps)	900
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Sediment → Sediment → Sediment Methylotrophic Communities From Lake Washington, Seattle, Washington, Usa

Source Dataset Sampling Location
Location Name	Lake Washington, Seattle
Coordinates	Lat. (^o)	47.63458	Long. (^o)	-122.26655	Alt. (m)		Depth (m)	63
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F106175	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074210_1164912	F106175	GGAGG	VNRRAWALTAASLFLAAACGAPPAKTELERTVSDRARGVRYVVPPGWKSFEGEIRSPAGSLLTLRVYDLVEADKAFVARLPDSLIPQLLEWAQLYYIVDGPPVRTATTVAGLAATELVYPIHVLKRDPPSKVIYWVVIRKTRLFVLRAAFPATSLAVEEPVLRKVVEGWAFVE*

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