Scaffold Ga0070698_100181556

Overview

Basic Information

• Taxon OID: 3300005471
• Scaffold ID: Ga0070698_100181556
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2043
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001673	Metagenome / Metatranscriptome	654	Y
F005673	Metagenome / Metatranscriptome	393	Y
F074525	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070698_1001815561	F005673	N/A	VNSDRVFADAIKAAQRLLWHTYDLPDAMKVAGLRKLVRSSTVQSALQCSSDTLLAFTLRAVELVIADQSRTDREMLRRLSDILNNPHLIQAVGPQNSPFGPSWLSVRPAPGYGATRRYGF
Ga0070698_1001815562	F074525	AGTAG	MSARGDIWLSRGFSVTCILSAFIGALMVGVLLGEPDVLMLFGAVGGVMVGAVFHFVVAGVIRLLF*
Ga0070698_1001815563	F001673	N/A	MASFVAVLLVLALGHRWSVTASWFTSDKTCGERHATPWFVERLDMDCDRLLRGRLWKLYDEGHFGRLRGGRGGAVEYMKQLYMKQPEHPDE*