Basic Information | |
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Taxon OID | 3300005471 Open in IMG/M |
Scaffold ID | Ga0070698_100149731 Open in IMG/M |
Source Dataset Name | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2282 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan: Kellogg Biological Station | |||||||
Coordinates | Lat. (o) | 42.3948 | Long. (o) | -85.3738 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F000995 | Metagenome / Metatranscriptome | 810 | Y |
F017532 | Metagenome / Metatranscriptome | 240 | Y |
F018219 | Metagenome / Metatranscriptome | 236 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0070698_1001497311 | F000995 | N/A | MNKPTDSQAGRPPTDQRDTCAGQITAQSPRQGAGRQPEDGLLPELSLYERLIDNGTATADSRGNAVDHVTARRLAIWLAARPQTPVFAQGLVRFVETGAISPALKTQLRSHARSGTYPDQSQAARLMQYCVARGTDLGPIGENFGAACDQIDRADLMLSDLHDRARRARDHREPTWPETDGPRIVALAGRNPDSQTVSLILDATTANIAIFAIAAHADEREAHIREVERFGQSLPEGSYGRRNRQA |
Ga0070698_1001497313 | F017532 | GGAGG | VTRQPEDSEPGRGPPDYVIVVAASGWLQDRFPAAAASLTHARQAGTNRHRDPEPDPEAEP |
Ga0070698_1001497316 | F018219 | N/A | VADLSPPAAAARQAGLDEPEITRTLDSARNTSQARNHQAEAVT* |
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