Scaffold Ga0070698_100051437

Overview

Basic Information

• Taxon OID: 3300005471
• Scaffold ID: Ga0070698_100051437
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4196
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000217	Metagenome / Metatranscriptome	1557	Y
F001138	Metagenome / Metatranscriptome	767	Y
F010018	Metagenome / Metatranscriptome	309	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070698_1000514373	F010018	AGGA	VDHKFVRLISHHGKSTCFSVLADPDMPGAEVVASALLQLKNNPRLFKKWRKHPGSTFKANGKVFRDAYQLTRDET*
Ga0070698_1000514374	F001138	N/A	MESAILSVIAFFVLIVWRSVFAGPRRGPLARAIAPQQQRHNHLLEGGLHISDPGSVAVIADNQLENNAGGLHRLDRKDPAKRYLQRIAALTGATQMGNCYVLDVGKMRFRVRHRHVSRLKDVTDPGCALEETCFYPAYKGMPKAEEIATALLQLMSNPALFDRWAAQSGAFKADGQAFRPAQ*
Ga0070698_1000514375	F000217	AGGAG	MNAKILTFSSHGDTTLLEYDPETADMEEVNRVIAEYEVKTGAQPFDMATGERIEKVTREQNEVLMVHPIAGG*