Scaffold Ga0070698

Basic Information
Taxon OID	3300005471 Open in IMG/M
Scaffold ID	Ga0070698_100014979 Open in IMG/M
Source Dataset Name	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0070698_100014979 Open in IMG/M

Source Dataset Name

Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8197
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

8197

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (77.78%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan: Kellogg Biological Station
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan: Kellogg Biological Station

Coordinates

Lat. (^o)

42.3948

Long. (^o)

-85.3738

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F026047	Metagenome / Metatranscriptome	199	Y
F045207	Metagenome / Metatranscriptome	153	Y
F066913	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070698_1000149792	F045207	GGAGG	VNRRLAVVIVLALLSTGCTADVLGRVRGFDVLQIIQSQPVVEAVLKAKNTGRVLAGIEALLLAFVCWYRIHTGAAWLSVTKDWFLGIFVCAYVLTTAGTAAGLERWIWDVGVYLGQQFNPTGGFLMANFDKAVGQHAQQILAIQGGAVPNMRAEDSRALEAVAWQFSSPFTAGLVGVNAIAIYLMKMVMQVSYAWLISFYWMMAPLIAPMVILPQTRSVFLGWLKTYVSVALWPLFFAFAERLALAIPWSAWLGSGDGAVDGWDLLTNILQGEFMLAVFNILFSFVYLSIPIASYLIVSGASRPFRML*
Ga0070698_1000149794	F066913	GGAGG	MQRRWVAGLVVALLLLGSSGASADPTSWAQLAQIIAWLQKIDSTMQSINGLVADIRNKFAMVYPDGSLRRIETFFEPVDSIKSEIEKLACNWRFTPRVEKLRLALFGNRSFCQSDWNLLFGPPVPMVDWDLESYYDWSAVRRLNLIKTRNQKSERRAAEAALLAHEAIQGRNAWDPTEPYSPGYSQRLSALGAAQLGNVMVEMGDTQTAMLELDQEALNDKRRRRLLDHQGAALIYMNIGQRQGNGPPVFDELLGGLP*
Ga0070698_1000149799	F026047	N/A	SCGLLILFYAGAVASELLFGLCSLLFGNWSFLGQLAMTAVLGMFLAFAERHDDEHLVPSAIRYYVSRRWRVLYSGARAHPYRGHALEGLVAGGPWQR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0070698_100014979

Overview

Ecosystem & Geography

Associated Families

Sequences