Scaffold Ga0070698

Basic Information
Taxon OID	3300005471 Open in IMG/M
Scaffold ID	Ga0070698_100003281 Open in IMG/M
Source Dataset Name	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0070698_100003281 Open in IMG/M

Source Dataset Name

Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	17782
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (59.38%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

17782

Total Scaffold Genes

32 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (59.38%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan: Kellogg Biological Station
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan: Kellogg Biological Station

Coordinates

Lat. (^o)

42.3948

Long. (^o)

-85.3738

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001944	Metagenome / Metatranscriptome	613	Y
F031217	Metagenome	183	N
F086941	Metagenome	110	Y
F090208	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070698_10000328124	F090208	N/A	MTPPTRPIHVTLADHFADAGVSRHRLRLRLASGEEFDCHSPSFDVDRLVLVVTTYDGVARTIRPGEIQALYERRARWPAYAGLTIATVAIGAGISALLVPLLTPLGAVYGALFGALGGAVAAAVVPSILPSAVPFEYARLLDRLGPLAYWRAVLPNADA*
Ga0070698_10000328125	F031217	GAG	MAGTGLRPASLRRRANGPQLTRDPLGGVRYDMSASRARRCATPLSAAVCALALIPVRGSGQTPPSARAQVEWHWFGGCAGTDSLVLEFHVDGKMVYSATFPVCQMRRADIRPEPQQRVLTFHFDAAPHRFGRQYRALEPEPITGNVWEAGRRQTAVVLGVSFATADRVLLNTRHAARPDRPARSEWIRGLELITRPVRRN*
Ga0070698_1000032815	F086941	N/A	VRRNRLLLVLVLGLAAGVVVVLRTRTPPSIAPEPRPAAAAVEPRRPALQADAEGDYVPGYQFTVNRFRFTGFSLRPEALVTFAEIATGTEQPVACLETLIRADTVHLRCDDPQVGTVTVDGKFLTRLATDRLDTAVLAAVVTVRTGSGEILYKARDSFKWHPGNSGGA*
Ga0070698_1000032816	F001944	GAGG	LDPIVFLAALLIFVGIPAFTVIKLARLRAARSQSPSADVTARLEAVERGVQDLQEELADTQERVDFAERLLSKAREERRIGS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0070698_100003281

Overview

Ecosystem & Geography

Associated Families

Sequences