Scaffold Ga0070698_100000142

Overview

Basic Information

• Taxon OID: 3300005471
• Scaffold ID: Ga0070698_100000142
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 64937
• Total Scaffold Genes: 66
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (62.12%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004003	Metagenome	457	Y
F004186	Metagenome	449	Y
F004349	Metagenome / Metatranscriptome	442	Y
F025117	Metagenome / Metatranscriptome	203	Y
F028755	Metagenome	190	N
F047580	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070698_10000014229	F025117	GAGG	MNDYYSLYTWAMDKQAHLEREATNRRLVRHSRYVNTHENARPRWPFARRRDDERKAA*
Ga0070698_10000014232	F004186	N/A	MVAALTAACGVPTPAAPPTAKEVLAKPQQSDLKDAHFNVTGKIADNGQTVELVGDGALVYKPKLAGRFKFTTNVGGQTVAILEISVDGMNYGMTPASPKWVATKSTSGIDPSAFAGASDQKYVGEENLPQGKAWHASAKDKDGNAFDAYIRESNGYPIKYVETQSGGQNITLTFDTYNTGETITAPPPDQIQAG*
Ga0070698_10000014233	F004003	GGA	VIVRVIRIATAMVSVGLLAACGGPASPLGPPSAKDILSKPLHANLMDAHFLVSGKFVSTSPGEVSVDVHGDGALVYKKPGAGRFKFETMVAGQKVSYEDISLNGIDYTFVVPGNGKWTAKTTASGLGRDSFTGASDFQYVGEENLPNGKTWHAKAKDKDGNQFDGWIRESDGYPLKYEITQQGNALVLSFDKYNTGESITAPPASQVVQG*
Ga0070698_10000014234	F004349	AGGA	VKKRSWLVLAISALVVAGCGNSAGAPAKPPTAQEILARPDSANVKDGHFSLVAHIVSGNITFDATGDGIIVVKPQQASRFTMLTTISGQSLKFEEIIIGGKEYDLSPDNPRWTVKPSTNSSNPSSFKGTDATYLGEETLPQGKAWHVKAKDDNGNPFEAWVRETDGYPLKYASTMQGSTFTATFDRFNTGQTVSAPPASDIQQ*
Ga0070698_10000014246	F047580	AGGAGG	VSRRLKRQLGKAPGGRGIEPSPHPRAVARTPLQRLNRILLIGGSGLAIGAVLLAVLSPRFDPVALGINLLAIGLGLLMGKGIGRFMFRRVLPTPNK*
Ga0070698_10000014265	F028755	AGG	MRSLMNFGLGCSGCVTLLGILLSLTLVGIHLGFPLVVIGVLGLIGFGVGRAVFREPPQY*