Scaffold Ga0070698_100000135

Overview

Basic Information

• Taxon OID: 3300005471
• Scaffold ID: Ga0070698_100000135
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 65274
• Total Scaffold Genes: 70
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (68.57%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005396	Metagenome	402	Y
F015318	Metagenome	255	Y
F016443	Metagenome	247	Y
F016601	Metagenome / Metatranscriptome	246	N
F091735	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070698_1000001351	F005396	N/A	VAGQRDLPLGDAFPPDRFLYASPVASTRFRGVLLSLLAATFVSGCSGDPGSPPPLQATASSSVSCKTGEGYQHTTLGYHLCFPNGWTPRDYTAEPGAGGALSVVAFGLPAAVPSHVPASGSFMPPIEVRVVAGAKDQTEISLAPGNQVTQTSVDGIPAEKIVVTQSGPASGAVIIVFEHQPNTFEIEEAPGGDDAAFSLVLDSFSFPG*
Ga0070698_1000001354	F016601	AGGAG	MKPLNAELAARAWEFAQGLDLEEYARLQNEVRTAWPAAAKLNGLDFDRAFLAFIAERWLDKAA*
Ga0070698_10000013557	F016443	GGA	MSIEPRLSSRVAIVLGGGVREALLAQPVLRACDGATVFASADAVGTLIGLPSVGRAFLFDDSPRELLRVFGRLRAGSVETVVIPYPARFLHVALAYFAGVPRRLMAAGTSGWAATERLPAVKGMHPVEANWRLAAVASNRPVLTPGEAPSLRPPEAVRSQAMARWPSFIGSGRRPLVLIPGGGGWSSRRSGPIWPAERFAVVANQSSRSASFS*
Ga0070698_10000013558	F091735	N/A	MVVNLAQITVDEVAVLSELSLGVVGHDGDALHVAAAAGALVLALVRRPDVPPRGDRVVPFWTDDFERFPARQVVQALSKQARIDSYA*
Ga0070698_10000013570	F015318	GAG	MAVAHRQWATVPAAPRPRLLPPGWRWAAVFTAVICLLTVPPILLAALRTPSGSLFPGYVVIARDAYVYQSMWRAGWHGAWLFHPAYTAEPLPGILLYPWYLWPAHLVGWASGPWLYHLTRLLAAAALLAAVSLLTRELFRPLLLRRWAFTLCVLGGGIGALLPRDVHFGPLTTHATEMRSPGSSVADLISMAPHLPWALALLCWTMVVALRLRHGGDRRLVASGVLALVALQLIYPQLALLAVVSIGGWALVRRRHGAIRFAVALALVQLPYLGYLLWVWETTPNALRVIRPALDVGDPFGFLVLSHLVASGLIVIAAVSRRLRGDLLLPALWIAGMTFFMFAPGISGTLGRSFMASSVPFGLCAAPGLLVLLRRLRAVRWRRRVLAITLAASSFYGIFSLAQPYWIAAFRLDPRAEYESRAEAALLARLAPYVSAHDVVLTTYLDGIFVPAQTDARAFNGHPEMTIDARRKSDEALAFLSSWSAAQRADFLQANGIDYVLTTDRAVAERLEADPVLHLIDREDAAALFQVRP*