Scaffold Ga0070698_100000113

Overview

Basic Information

• Taxon OID: 3300005471
• Scaffold ID: Ga0070698_100000113
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 68318
• Total Scaffold Genes: 76
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 54 (71.05%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008404	Metagenome	334	Y
F010513	Metagenome / Metatranscriptome	303	Y
F032765	Metagenome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070698_10000011321	F008404	GGAGG	MKNAMGVELSESERSLVECYQGLVRVLKDGKDLAPFERRNALKAVAALWQIANGLDLDPGNLYEIGV*
Ga0070698_10000011354	F010513	GGCGG	MYLACPNRCSTNRFELWNASVFVDSSGRYLDYKVDAPLYRCTECGSPVIDLGEVAGAMAADRAAEESPAREYACPSCEELFSAPKEQTVVVCPACGQTFPVPEAP*
Ga0070698_1000001137	F032765	AGGAG	MKVIVNFANILVAIILLLLGLAVFTRHRIASYVVGGFLVVLAALSILAYLKILNVSSGPINIG*