Scaffold Ga0070707_100239627

Overview

Basic Information

• Taxon OID: 3300005468
• Scaffold ID: Ga0070707_100239627
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1765
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004003	Metagenome	457	Y
F004186	Metagenome	449	Y
F004349	Metagenome / Metatranscriptome	442	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070707_1002396271	F004186	AGGTGG	VQPRRVLLVVAVAVLTAGCGVPTPAAPPSAKEVLAKPQQSNLTDAHFAVTGKITNNGVTVQLVGDGALVYKPKPAGRFKFTTTVGGQTLTIEEISVDGTNYGLTPASSKWVSTKSTSGIDPNAFSGASDQKYIGEETLPQGKAWHASAKDRDGNAFDAYIRESDGYPIKYVETQTGGQN
Ga0070707_1002396272	F004003	GGA	MTKVLRSVPAVVTACLLAACGGPGTPLGPPSPQDVLSKPVHAGNLKDAHFLVTGKFATNGATVGVTGDGALRYKSPTAGRFKFQTTVAGLQVSFEDVSINGTDYTLTIPGNGKWVAKASTSGLGPSSFTGTSAFKYVGEESLGGGKAWHASAKDKDGNPFDGWIRESDGYPLKYVITQQGNSLTLTFDKYNTGVTIAPPPASQVVKG*
Ga0070707_1002396273	F004349	N/A	KPRATLAIAVLMLAGCTSTGNPAAKPPMASEILNKPDQANVRDAHFTLVAHVVSAGVTFDATGDGAIVVKPARASKFTMTTTIGGQSLRFEEIIVGGMEYDMAPDNPRWTVKASTSSNPSSFKGTDAVYLGEDTLKLGKAWHVKAKDANGSPFEAWVRESDGYPLKYASTTQGSTFTATFDQFNTGQTVTAPPASDVQS*