Scaffold Ga0070707_100091280

Overview

Basic Information

• Taxon OID: 3300005468
• Scaffold ID: Ga0070707_100091280
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2948
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000432	Metagenome / Metatranscriptome	1148	Y
F006774	Metagenome / Metatranscriptome	365	Y
F010452	Metagenome / Metatranscriptome	303	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070707_1000912803	F010452	GGAG	MAITFKVDSTTAEGTFIRVLRDGRPFGKILDAVGLYRFYEADHEKLGSADLKDVNLDRLKTAIQSRYERRG*
Ga0070707_1000912805	F000432	GGAG	MPDEAVLRAKAREVLRTGKLPSRPPDHTWGGTGAGAPCPVCGETVTKDQLEIEAEFARDGDNPGLDKFHVHVTCFAAWELERRQDGPHS*
Ga0070707_1000912806	F006774	GGA	MAEQQTATCRACSQTISPEDTIVFGYGLLGHLDCRRPRVLSAEERTLLFIYCRDHQVGECIRCTARLHLREVASLDLGVRSYMCPWCHTDLTDSIRAHFYGCAMLPAEVRRRAQAAREAGRSLVRQSQRLRDAADLARREAEATLHALRNAMRQSPLKRRE*