Scaffold Ga0070707_100080872

Overview

Basic Information

• Taxon OID: 3300005468
• Scaffold ID: Ga0070707_100080872
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3137
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003305	Metagenome / Metatranscriptome	494	Y
F009739	Metagenome	313	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070707_1000808722	F009739	GGAGG	VTLVDLLISLGSAGLAVFSLPTVLNKASQVPRRTASIPTAAILTYFVPLFAISGLVLTSITIAGQAFVWWLIVAFRPVKKQK*
Ga0070707_1000808723	F003305	AGGAG	LTAWEEPKELDTDNEAVISLYDGIRKILDQQSSPKLKQERKIPRAERHILQCGRILKVDVERKLVVVTVMKSDGELHELRIQANDD*