Scaffold Ga0070707_100004357

Overview

Basic Information

• Taxon OID: 3300005468
• Scaffold ID: Ga0070707_100004357
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13266
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (80.95%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001901	Metagenome / Metatranscriptome	620	Y
F001906	Metagenome / Metatranscriptome	619	Y
F004205	Metagenome / Metatranscriptome	448	Y
F006201	Metagenome / Metatranscriptome	379	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070707_10000435711	F006201	AGGAGG	MNPVDKTLLTTAFEALGPERVTRGLTATGHSWRDCFLALAIAGEPDALARELQKRWRKEHVVSILLGVRVQAVTEIVKAWDHDEGAFRALAAEWLELNRAGAATATVVGT*
Ga0070707_10000435712	F004205	GGAGG	MEARVTLQSQSFRLRERMEEANISHGQELRADLPNIRVLALAGDGDGQALFCTMGSIRVREILNQGDDRPLPTDVTLEGLGVSSSGTYDILNALVSSNGNLRLVVDDQTRVVPAAKGVGAAAVSTAAV*
Ga0070707_1000043574	F001901	GAGG	MTRRKQPWGQQRGWIVPADGSPPQELPRHMVGRKLISWPGTMPEEKPPEPVKDLASKDYYHRYVLNPEGVYVYVPQGRDAESLPESIKNDIRRQVKGQS*
Ga0070707_1000043575	F001906	AGAAGG	MTIEPNDFQSRLRVLLGLQGAVLTDEELSHTAERYPRCRGKEHWDVREYVRRTGVGAREYRVVRGSSIEDVYRSAERVRAAALGTALNELESQERSGEAPGGST*