Scaffold Ga0070707

Basic Information
Taxon OID	3300005468 Open in IMG/M
Scaffold ID	Ga0070707_100001388 Open in IMG/M
Source Dataset Name	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0070707_100001388 Open in IMG/M

Source Dataset Name

Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	23815
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (73.91%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

23815

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

17 (73.91%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan: Kellogg Biological Station
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan: Kellogg Biological Station

Coordinates

Lat. (^o)

42.3948

Long. (^o)

-85.3738

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008075	Metagenome / Metatranscriptome	339	N
F009595	Metagenome	315	Y
F013400	Metagenome / Metatranscriptome	271	N
F025702	Metagenome / Metatranscriptome	200	N
F027474	Metagenome / Metatranscriptome	194	N
F046305	Metagenome / Metatranscriptome	151	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070707_10000138810	F008075	GGA	MRESRAFADTFQSSVAEGLANTLGSIVMQTVKTLLSYSLETYAEKPNELHRELSKVFGSGATTLERMITKELFQRLSLNYSNELDFETSVNVARRDMILSERGNN*
Ga0070707_10000138814	F013400	AGGAG	MADATVLTAVWMIAVLQLVLEAGIVLYAYRLTRLTGSFRAWTMIILAFTLTTASSLFSVFLLLSNPDLIVGLVQSIGTPTLVLSYSISIATSLLFFFGIFDLVRRFKLAAKKPPGSNPSAF*
Ga0070707_10000138819	F025702	N/A	LQTPARLKDLERSINEDLAKANLPEVKISGFKLPEQALELSFERETVTGVIRDKIWEIINSHYKKLMSELGLLEG*
Ga0070707_1000013882	F046305	GAGG	LREAMLTVGTLLLFFGGLGAIAATTAMGAGALIQPAALAQMGWSLLIFTIISFVGAAMIVRNR*
Ga0070707_1000013883	F027474	AGG	MTDQAGNWRIHVKKGSYEVEVEGPTAERVEKMFDELVKKYMKKIASP*
Ga0070707_1000013889	F009595	GAGG	LRSDIIETFQATVVQCFSQAIENLLGRPVRDQLMRILSEHKIPRSEIGTRFDDVARVLNDVFGTSSRMLVFKTVVELYDEYSVRPTFSFYDSLKDQILYLREKVLADIIKPRHSPKIDDSIYLTGPRPIA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0070707_100001388

Overview

Ecosystem & Geography

Associated Families

Sequences