Scaffold Ga0070707_100000595

Overview

Basic Information

• Taxon OID: 3300005468
• Scaffold ID: Ga0070707_100000595
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36389
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (68.89%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000186	Metagenome	1702	Y
F006617	Metagenome / Metatranscriptome	368	N
F008019	Metagenome	340	Y
F010240	Metagenome / Metatranscriptome	306	Y
F012566	Metagenome / Metatranscriptome	279	Y
F031444	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070707_10000059529	F010240	GGA	VSSQRLLITNFREHLGVYVLASASNAFLTVSQYLAVSAAVASYLPVDPDTSALIASYGRVPGIALALLLNSLAFEGILSVLVVALALTAIVKTGWRLAYTFSSVVISAFVGYWLGSKFLAILEWISTLQTNRVDISNSYSSLFWLGLGATICYVLKILILRKTYGKLGRDEH*
Ga0070707_10000059531	F006617	GGAG	MLLWYVWIRLVDGAWHRLDEISKQLRLPNNAIEWAAKFLCDKGMAERGFEENEIRLHQGNAKFEDAVRALSSPTKSSK*
Ga0070707_10000059532	F008019	GAGG	LGVRKKVAVSIVLIIVVALAVWQFTSPQLLPPVGNKYSTFGTYSNRGSWTFNETTRYVTAYLAVSISNMTFPRTGIGTDYSLVISDLNQTITNSIVKGFGVRVTGMNIQDNVDGSTSTWGNGNAVSDAVQATSIFFFKTSTNHMLRFTVTFQLYDLLPLGSIPDRSVTSSFNITQTVL*
Ga0070707_10000059535	F012566	N/A	LSPENAGRIFNPSNFSTSNNNDDNRLCREILESDPAIRVAAFIEGAEVTSYAEAARTKNAFSQSGDLRKQVGFWSSIVTQMARQTDQMFGNTEYVCFTHKALKMVSVPITSRRSLGLSLDRSADPEKIILKILAKFDFGQTV*
Ga0070707_10000059536	F031444	GGA	LDLKSDFASLFQTAVKDGLRNTLGETVMLTVVPLLKQTLQIYAEKPGEFHRELQFYFGFGALTLERMILKELFQKLNLHYPSNNELDFETSIGLARKDLALIERRSR*
Ga0070707_1000005954	F000186	N/A	MSSQRSFWCERLHANPSRMEQELVIKLQENGIHYQTQVEIPETTADFYFPLDPRPLLVSVDGRVHLGTAQVVKDEELRTLLRKRGYRLLELHYLSYSDKKRDKFYEEILATIGMRSPVC*