Scaffold Ga0070707_100000543

Overview

Basic Information

• Taxon OID: 3300005468
• Scaffold ID: Ga0070707_100000543
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37715
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (76.19%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003458	Metagenome	485	Y
F012009	Metagenome / Metatranscriptome	284	Y
F027149	Metagenome / Metatranscriptome	195	N
F028476	Metagenome	191	Y
F029697	Metagenome / Metatranscriptome	187	Y
F043312	Metagenome / Metatranscriptome	156	N
F069956	Metagenome / Metatranscriptome	123	N
F091786	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070707_10000054314	F012009	GAGG	LSPARSAVRPVTPGSVKILMMVEAGVIGFLAYWIVSEYVFNAYFHDYVDQLLGTHGTTFTAALGLGVGLAGSAIAATLYRNLQHAKSRLETIAAPKIRGAVEKILSNLPTVEEPQRASVTRAPALSSIAPLSPSQVIAQVPVSREEEKKSNDVKS*
Ga0070707_10000054317	F029697	GAGG	MLLMGLILLIFGVIAEAMYIIANKVAYSGIVADAYLTGGVVFIMIGFVLMLASVKIPKLRVP*
Ga0070707_10000054318	F043312	AGG	MRTPNITLIHETISICFDQVLTSMGEMTKRMTYDFLARRGISREDLSSRFEDVEALLVQLYGQGGRSVMIGTLAKLCEEYSIPLNLGYSDTLSNRMSQLSEDILMRKLTPKHFRKDVDTTTFEDNTGSYADWTD*
Ga0070707_10000054319	F069956	GGAG	VIQVSLSNTLKSVGDDCLASVQSLLGGEREPVESLVAHLGDIDSVLDELFGKFSKIIKHITILQASSQLKIDPPSLGGSLFWMVEELRSTLWKGQS*
Ga0070707_10000054332	F028476	AGG	MKLVTILIDWSKLKPEYVPGKCNIGRRGRAIRLTTGVVLIAISIILGILVLNPVNRWLSLAMVFPAYVGLLACLEGSTSFCVLHATRGTYDLNEPQGFASKRSKTLQKVVSEDWKKLDRRKALKMHLEALAGAVLLAVLLSLA*
Ga0070707_10000054338	F003458	GAGG	MAESRIPPGASLLLIGSGLYWILSSQLISSFTVLSPGLFQAAALGTSLIMIVGIISATVGLWIVKVDFEELRDLFARRDGWIFTVPLALVAADIYLTLIVLSTNSQIVELNPFVSSAIAIGATALVPFIISYLALSQGLGLFMLRIGSYLFGPLKSARYLPFVSICGAAAFGPASNLVLFLDPNAGLIAYVFGALSCGVLSVILFTRVDRSQESPR*
Ga0070707_1000005434	F091786	GGA	MRYMARTVTKSQASKRPVKSAKALSRVRKRSVSHTRASPRVSTRKTVSRTGHQQISDTTYIFECTRPGCGYRIPREEKAELGSVRFDLKCPKCHHREFKCLGKGDLPASFELPVPTTNIDFDSIRPVDLGSN*
Ga0070707_1000005438	F027149	GAGG	MSEVTLLPGNIVECAWCKDSKPISETTWFMPEPGERSVRLCSFCYEEARKQVRLLRFVRNRGEFPVEAAS*