Scaffold Ga0070707_100000400

Overview

Basic Information

• Taxon OID: 3300005468
• Scaffold ID: Ga0070707_100000400
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42804
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (72.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006340	Metagenome / Metatranscriptome	375	Y
F007853	Metagenome	343	Y
F029079	Metagenome / Metatranscriptome	189	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070707_10000040015	F029079	GAG	MPQRSEELTQSSLAEILGKMSEKGYALNFDVTLELATPTLKVGTMRVHGKLESAALKKR*
Ga0070707_10000040016	F006340	GAG	MSQPWTGGGNLRAVRGATASRYVALVAVLTALFTAYGYVSSVELRSLTRSLDLFFLLPAFFAILVSLTGKKWGGTVLATIIGLIFLPTPSAGSNFSPHIAASVIVNGLVFDLYLQHSGNSLLDPSRKHLVLAGTLGNLAMAPTGLLVLQAVGIASPAVIWAIALIGDTLVGAAGAFFGTIVVERVKGLQARRVLEAKSDIRVRI*
Ga0070707_10000040018	F007853	AGGA	LSSRSPVEQKLLESKLEKALDEAWSKVNIALDNAPKPSASFAMEVWLAAEALEYSSFLFNLAYGLEDLKPAVKARKHEATLVLIKDSIDLLKRTREGRHKSATDAYVNLRTAADYLKTAHLDQIKKSTKKKDSV*