Scaffold Ga0070707_100000366

Overview

Basic Information

• Taxon OID: 3300005468
• Scaffold ID: Ga0070707_100000366
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44647
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (76.47%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016136	Metagenome / Metatranscriptome	249	Y
F043335	Metagenome	156	Y
F052498	Metagenome	142	N
F065660	Metagenome	127	N
F072228	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070707_10000036610	F016136	GGAG	MKRTMTMLLGIFALAISALAVPAVAGAPPTGSVDSSNRVIFNSGSLTGVFEGNVPHVSFYATNQLGRTTYQLNFRALIEFSIGSGEGIYESSMMVARADFDSATWTPSNFYAIKDANTGTTIGMGFNFSLNGPMQIVEQTPPPQSLKPGDVVLVVKAYNNTKIITVNGQSVTINTAEIKIDFVLKNWPFVSTSDKLALQVNLHSDYNHFDLDQSTGTTAVDATNDEGAGVMEHPYTETTNAEQDVRYASGPVTSSMNIGFFHFVNTATVTSATGYTQPVPVVASYKAEKDGPETFLKLYLVYPYFPSGSTLVHDPSFGLQGGLPTLYIIAGGAGIAGLAAVLVIRHRHLQIQKFPKSN*
Ga0070707_10000036614	F065660	GAG	MTTAQKPSPKSRAKLDQVDKKLLSDILAILVILLFAIAAFWRYPVPGVLLAGSLAITVFVAADVVLFRRG*
Ga0070707_10000036628	F072228	GGAG	VLIGPLGFAARSLHRRGFHSHLAFLGLTMTVATTTFLLLLGQDLASRLGVDSSMRSTFGISWLIFAYLVLALGLIGIVGLLSTSYLVSSMISQRMRDIGVIKAAGALPRRLLAYVTFEALVVIVSSCFVGSLSALLIYSSWSWPNVSLFKQVGPISNAGATILIVVPLISFLLSYMVASFRVRRIVGASSVSAISKQLSNLDLKGLGKPLRIRRLGSAFNLATRNVSRDRGFNKTLLSVGICICLSVIVLSGALVSANTSASYVIRAMPPHVLIVANSNIYNQYVSLGTAFSRTATVSSTDYINEPYIITPQNASAFRSIPGVETVDTRLVTISSITGYVEAHFANNQDTGENINTQIIRNRDRLSPNSHSRSRLE*
Ga0070707_10000036629	F043335	N/A	MIAGDSLVGNIVQTPFNLSQVSAFGFRYDIKSALVDPLNAGRVLYAPVQTVQRNLGVAGYNVLLLKVSSDPSVLPAISKLASSFGLEVGSQDPILNSNLAFLNNTWSYIFLIPILALALTCGILLSYLVTNFSRRFNDYAVLKVLGSSARYRLKLLLWEAWGVLAIAMLIAIPVAWGVSIFFLIPDPVVSLADLELSTLVSASALSAVSVASAAIYSRRLGLTTVKDLRT*
Ga0070707_10000036630	F052498	GAG	MLTVIVIIVAVVLGGGVMTFAIGLPSSPCAGVAGAIRSFTIVADINGFNDSVNHQQVSWPVLTVHRCDVVKVTIVNDDTQAHGFAVDYYAQRGTEIQGRQTLPVPAFLATKSGQFRVFCISFCTIHAFMQNGLLNVI*