NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070707_100000328

Scaffold Ga0070707_100000328


Overview

Basic Information
Taxon OID3300005468 Open in IMG/M
Scaffold IDGa0070707_100000328 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)46683
Total Scaffold Genes63 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (52.38%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005548Metagenome / Metatranscriptome397Y
F007088Metagenome / Metatranscriptome358Y
F012379Metagenome / Metatranscriptome281Y
F015802Metagenome / Metatranscriptome252Y
F021819Metagenome / Metatranscriptome217Y
F025566Metagenome / Metatranscriptome201Y

Sequences

Protein IDFamilyRBSSequence
Ga0070707_10000032816F021819N/ALPRPQCRAAYDGDVLANFSTGVSILLLVAAIGPVIALIWFSWRFLRAGKRYDERERAAGRRPPGY*
Ga0070707_1000003282F025566N/AMAPYTWTVREGSLDGAVVMREYVYDVPDKEPVEGQELYLSNGSGPWRVTLMEKVPEVHRSPYNIIVVERAY*
Ga0070707_1000003283F015802GAGVEQGTNAELEAARRELQERYRRFAATRPFSWNRMGDQMQIARLKRRIAQLERQAAGQ*
Ga0070707_1000003284F012379N/AMVTAAARPHIFWVGNDQERVRGWPIGPALLAMLGDSNGDVHDALADERARLTRQGYASDLPLPALWWNPERGA*
Ga0070707_1000003286F005548N/AVFRWFFSLFGRGRKAEADPIRESEAYARSYGERSGEIVSVVRQEPKPIPRRTGDMTGELLRRAFEVKLDSRGRAKT*
Ga0070707_1000003287F007088GGAGGMQLFLRDPSYTDRLAAFLTSVGRRAVVSAPDRVDIDETTDDSQHVELELYLRVWRVLYPDADVEFALN*
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