Scaffold Ga0070707_100000179

Overview

Basic Information

• Taxon OID: 3300005468
• Scaffold ID: Ga0070707_100000179
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 62133
• Total Scaffold Genes: 69
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000916	Metagenome / Metatranscriptome	835	Y
F005205	Metagenome / Metatranscriptome	408	N
F005907	Metagenome / Metatranscriptome	386	Y
F014490	Metagenome	262	N
F047597	Metagenome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070707_10000017943	F047597	N/A	MLDITDGIVHVLLVAFSGVVLLISLFAYVDRKTSRYFFLSLAFSFLAASEIVSLIEVWFLSTQLIFIPSTGIHLSHFLEFLMLASFSLALLVRN*
Ga0070707_10000017948	F005907	GGAG	MKRAGSFLGPVGLFFVSLGYTVSVAIARLFVTLESVCTQNCPVLRVQGFRFHHMYYGALLLLVSFGVMIYASDARARWDSALVAGIGLGLTADEIGLLILRSQYWSPTSVGIFAGGGVLLYLATALKSWRAGLSDFHFVDRYQFLALIALLLGLTGFLFFDRPVRMVVELTAVGAWLSSALLVTKYGRRHFFLLRNSPLNYPPPNR*
Ga0070707_10000017961	F000916	GGA	MATLTQQKRTRSLDERYEMLRKTLAHYLLLQVGTFVTAAGFDAIAPAMNILTDMKANLKVQDVKTNSRGSMVEALSQNLADSMGETFDSDYEIESADASSTVKLDRCGCIESVVAQAESYGLTKAQARSIFCATCMSSYKKAAEALEVGFKGKLRGDHGCSMSFSQK*
Ga0070707_10000017967	F005205	N/A	MSTVNVKAALEGPMHVRAILSGALGVFSSLLAIGWALWAYNFPSAVNVNSSQSQNLMLTQLVLAFVMLVGSGLMLARFTLPGGIINILGALSTFIIGVYFSTGIADTARSKDLTLLRLHFSGVYTGTVSLATDRIVSTFLVVPVFPIAALLLISGLGALATYRSGKRAAAHR*
Ga0070707_1000001798	F014490	GGAGG	MARTVLELKCISCGVKFERSFERKRGDSDYSEGEMVRLEGASCPNKCSGEWFAVEKSHPIRKFKRNMGG*