Scaffold Ga0070707_100000165

Overview

Basic Information

• Taxon OID: 3300005468
• Scaffold ID: Ga0070707_100000165
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 63617
• Total Scaffold Genes: 85
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 65 (76.47%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009059	Metagenome / Metatranscriptome	323	Y
F014967	Metagenome / Metatranscriptome	258	N
F089795	Metagenome	108	Y
F104542	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070707_10000016518	F104542	N/A	MASSIGFASYLLRNGDETDPRRIWRLRRFVLRPPLPFLIFLVVVGIWTAAGVLLSPWSQDQIGSGGDTYYFFSYQIWYVALSALLLLSFVSLPVLSFYHQSKIVHDKKASVSMKIISVCWAFFGALSFFQIAAGGLFLPTSETIGLVADSFLFILIAFALREPTILGRIVTSGETVSQAVYSKVNTDTIVLYNTESDRRSLVETFVKDGLASGQDIVLQVTKGEVPFYRAVLKGSALTDSSLGEHSVTIQPLEGTVAPREINGSLPTSVPTERRELVDLDELDPDQCRDIISRISKPSNAPLAKRTGRIWALNVEGAHPRVLDLLQEANPTARVIDLAMQQDAFSSMINMEHEDILGNRLLLEYEPTSKYEEIAQKFAREFQANVESVAIFTSAGSPIFRKFRDQRNISLFSFSTKTSSPARLSDEQVLLPERDTSLLLDAVDKLLQALAKKRIGIVFDVFTDIILSQGFEKAYGVLSSVVEMTESDTVSILVLINYEALEPRVLGAIQGLFRSQLRFNLESLKVVKLQGTRQEDNYKEEPLAGVQNSAGGIRA*
Ga0070707_10000016519	F014967	GAG	VTLKVRPVKLRDSLYLLIPVDIARLLGVASSSDFQLSLNENQNSVKLVYELKKEENQTVDEKRE*
Ga0070707_10000016532	F009059	N/A	MKHHHVPAIERALPMERIVAAFAERFDDPYLDPMAELSFEELTAAFPDMPKEELEEGLSHWTNHSGEKTLSTKTVETGGAETRVWFVHGLARHRIDPSSTSSGRVALG*
Ga0070707_10000016584	F089795	GAG	MCLVARGQNPNFSSHKFSKSLPVLAKPVVSKPTTPRPDGITFLGGIALLAGIVLLVAAITFTLPYPDGWDNGPGLFGVWIMLCFGYFGFGQFVPALLRPIGIPIIVILAILAMLYLAAGIGLLSGRRWAWTLSATLAFFGVASSILQAVTLSFYDFFGIPGLIVTLVILVYLASPLARNFFFKRPLSRPSVLLIADD*