Scaffold Ga0070707_100000120

Overview

Basic Information

• Taxon OID: 3300005468
• Scaffold ID: Ga0070707_100000120
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 73908
• Total Scaffold Genes: 81
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (59.26%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000611	Metagenome / Metatranscriptome	987	Y
F001047	Metagenome / Metatranscriptome	793	Y
F001899	Metagenome	620	Y
F003096	Metagenome / Metatranscriptome	507	Y
F004341	Metagenome	442	Y
F007215	Metagenome / Metatranscriptome	355	Y
F011481	Metagenome / Metatranscriptome	290	N
F030393	Metagenome	185	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070707_10000012019	F007215	N/A	MTVFVICLVAVAVLAWYQSLPKPNGGPATPTAHWTEYTLTKNGNHTQLQASYSDGQVTTEQVLWLNFDNRTAVYNYFGCNPSMPGCTLDGCAFTVLNDTASEYRVRVYCAPGA*
Ga0070707_10000012032	F011481	N/A	MLSLRDENFNLLTNEAEDRGITVQELIRAVIIPDWVKINTLAKPNSSGNSEKIRPYQTVSGRQPIIQAMGRLRD*
Ga0070707_1000001204	F001047	N/A	MRETMFDESYNIREVLDDVIERVTLREKLIQTAKGFAEKKKEERYTLAIRQFDNLMTDFLRLYQPILDRLRSYRESLSKELSTLKSSLATVNGMLEVSKGIEGLAAKVQRLESDGQELDETIKEKSKISDKIDDLFNRIRTHNPGMAGPGRDSFADVMSGMPKDLFPEEPTREAPAAKKTGTRS*
Ga0070707_10000012040	F001899	AGG	VATSGRDESRLAMTCNFRFEVRPEDQIVELVAEHHTVHVCLDCLALLTVHRRIHHMKVEKVIVEMAERTPVLAEA*
Ga0070707_10000012044	F000611	N/A	MNFPTYVFATVNPGRSTNVVEELKRNSQIDIIAPVTGRYDLVLRLKPNTPHNIFQTVKEIRNISDIRTTDTHTGFDGITPSKKFENQMALGFSLLNCEHTTSEQVIKQLSSIPGFVEASTVPGQFDIVALWQAKTSEEIVQNSVERVSHLNGIFKSETILAYTPVFKA*
Ga0070707_10000012053	F003096	AGGCGG	MTANAPTQRDEATDPLSMAGLVDSSLRPGGSISLTFSDGIVHVMLDQTGDWTITAGLSILSDRMMQLSRSLEELGFFQAAEQGGMVYHFWTSALKDHYSDRSTAEETLLRVVKSFQASSVPRYIG*
Ga0070707_10000012068	F004341	N/A	MPKQLVLYMSKEDEDSFLQYLRSTGDLVILPSTSPTSEVAPVSALPEPSEDEATRRFWLQKTTVSLALVTEYAPEKNGYVIDGFQSPVVEFLRSWTVSNVLLAGGIRADMNYLDDATQDLVRKPAEFRGWFDAMQNWIRKNFKHLTLLTYVGPGAEEFSEKGGLFH*
Ga0070707_1000001209	F030393	GAG	MGKIHKVEKFFDVLMSFASLVGFASTAYLVWIFLNTPPTIVVTTTNVGAPGIIGYPVQTYVIQGVPFFWIFTSLISLSAGHTYRSAKHLILTLAGKHYFPHAPHLMNTQPTPTPTAPRLRQTESSQ*