Scaffold Ga0070707_100000104

Overview

Basic Information

• Taxon OID: 3300005468
• Scaffold ID: Ga0070707_100000104
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 77618
• Total Scaffold Genes: 92
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 66 (71.74%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (57.14%)
• Associated Families: 14

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002266	Metagenome / Metatranscriptome	576	Y
F002809	Metagenome / Metatranscriptome	528	N
F003985	Metagenome	458	Y
F005204	Metagenome / Metatranscriptome	408	N
F005236	Metagenome / Metatranscriptome	407	Y
F007071	Metagenome / Metatranscriptome	358	Y
F007642	Metagenome	347	Y
F008127	Metagenome	338	N
F012444	Metagenome / Metatranscriptome	280	Y
F012766	Metagenome / Metatranscriptome	277	N
F015713	Metagenome	252	N
F027130	Metagenome / Metatranscriptome	195	N
F030713	Metagenome / Metatranscriptome	184	N
F031837	Metagenome / Metatranscriptome	181	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070707_10000010414	F030713	GGAG	LTEKKRLPPWEEAKLVFKMQEETRKRKLLEVDMQHRRVRAKRVGPNTSDELEENRKRLRALQERIEHGDDE*
Ga0070707_10000010417	F005236	GGA	MGFLSIMGKILIGLAMLTLPVAVSLILVFSETLTTIGVAISLGASVFVFFCGIYAGFLGIKYERLQQKFDSFVNPLRIRSSAVNLIKAICPIDHGEVVFVHVSPHRDDARPDGLDIFLGSCGHEVHRGEIEVEQPAESA*
Ga0070707_10000010421	F002266	N/A	MTSQLVRKAEAIRIREHRLKPTLRRKTEHEIIEFIHKQGLVSALGGNELPSFISAILGKPWKPSRKGFSGWMDWWSINISGQPVARISREIEGRKDIIATRIFRRTKTFVSSKLWPILDPIVKHHQDLAGRHQILSDMETRVLETIETEDSIRTDHLRKKLGLEDKENNSRFHRSLYKLETYALIVGVEDPHPEKHLHANIWQTWDKRTRQQKHPSSLSYNEAQRRLLVKTVDACVLVLENQIPSWFKWSSDMQEAKQQSLKDGAILKSGRYLVSSKI*
Ga0070707_10000010426	F015713	GGAGG	VKFSWRDVAQDAEKHAHKMAEDIFALEPDVTEEVDLKALFERILGKEDWTDKLAANLGRVKGLFHRPQKETELPEDLKLLIPNMKDVENAYVEITSGYKDFIKAVWVAQHERQWRE*
Ga0070707_10000010431	F007071	N/A	MSGLSLRLTEIRSLLLPVSQFLAWPIFFFLTSAISQQPAYFLALLLVLATDVIDKSPGRRGLFRDLVAGGATTVLALFLNDLDGITVGAIVAIAATSRLVLKLH*
Ga0070707_10000010434	F008127	AGTAG	MSDEFLPRAHSRRLGELERSNWKSLRDGRNYDRIDPAIREIVALLNRKGYWTFSSCSGGHPTNPRWKINRHESGYLAFSPPSNVAFALYLGLRKKNRDFTVEAQAVIDDGDGGDRETVCTRFYWQLSDRRKHKLEHYGRLFAQMKRIIEDLPTAPGDGMEVLSGLFGKENLQTGVRIVKGQMRRFTNS*
Ga0070707_10000010435	F007642	N/A	MPSLTVREAVTAPEKPLADVLVEGELSPFEHEALYRILRKGFKLEHPSYIELLDEDLATRVNVTFHYPYVATVFTDVLRENWRDLKELLRQVRYRRGKAGAAVTLSFIDDGRRLVFNSGVLEEKELSSALDQVGHLTGILAQMLRPETMEKPLQLVEAHYDKKSDRWQEFKGFDSLDEKQSYVFDESVFRWVRS*
Ga0070707_10000010452	F005204	N/A	MSQRGLFRLVHLPPDLATQLKDSVEEAFQSLGGATAELILHYARRRHHVDMNKLPDGIEELDKALGEILGTGRRMVVNHCSEILTRRLGKEVRAKSDKLSDVFRQVAKIYQQRAAIQQDETTIFGSAEKTDDSVLQGNAVEGILRD*
Ga0070707_10000010455	F012444	GAG	MGKVMISLTDEAEELVRDEVGKLYFGRTGGFSIFFEQLIRKYFNGHMKERKSK*
Ga0070707_10000010461	F031837	GGA	LRLVAATSDLFLRSRITELAKQTGADPFFGTGHDELRRLVAEKRPELVILDLSSTDYDPFTVAHELKTTFNARLFGLYPHVKTELKKRADEIGFEYVVPNSNFLFSLKRVLLERAEDD*
Ga0070707_10000010463	F002809	N/A	MACFGGRCIPVIERLSPRSNNASVYQREIIAVPNDGDRGELYAELERACDELDKTLEMLKKAGYTLREFSKVLEADPTGILVTHYPTGYMIYPDEINKTPWEYPSLRPVVDLDYLVELLKRARQLKRAKIEIERRLGKRLVPLS*
Ga0070707_10000010473	F027130	GGA	LIGDSGEKPVLGKENSKENKLNEYFRRRCSNYERFLCDRVWECALCAKQAGKVETLELSTVTKVEALRRR*
Ga0070707_10000010474	F012766	GGAGG	MEALREEEVLALEEELLRRLEEKLTPLVERAAVDAAKVAMHELRLDLMNHISRHEDTIRRLKRTETALNHIPTTR*
Ga0070707_10000010482	F003985	N/A	MTTREPASTTSPPKSNSLLLDKYSRTFLLLLSGINLVLGAIFYSVPSSVIPSWPWPVKELAVRFLGAIFLAIAFGCWSAVHAELWQRAKILMLVGGTFFGITGIVSLVQGITVSSDASTWVWTGYFLIAAAGCLLLLQRHGWHRRQAETPTSTMPRGARLFFGIQTSVVGIFGIMMLLVPGLAQQEFWPWKVYVSTLQTFAALFLATCLATGWATRQKDPERIKVLLPLDAAFPSLALLAVGIGWNTILAESPSWYVTSVWVGLYSFVAAGSTILYFTLREQRR*