Scaffold Ga0070707_100000048

Overview

Basic Information

• Taxon OID: 3300005468
• Scaffold ID: Ga0070707_100000048
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 103194
• Total Scaffold Genes: 111
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 68 (61.26%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000186	Metagenome	1702	Y
F000611	Metagenome / Metatranscriptome	987	Y
F008485	Metagenome	332	Y
F008873	Metagenome / Metatranscriptome	326	Y
F009674	Metagenome / Metatranscriptome	314	Y
F027476	Metagenome / Metatranscriptome	194	N
F033736	Metagenome	176	N
F036188	Metagenome / Metatranscriptome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070707_100000048101	F033736	GAGG	MRRWFTNQIVMGALVVLAVIVAGFAGYALGHSGGYAAGYSAGYTDGNPDYAKIQASVKSSEVNYFGYVQQVLSKLAVESQNRSVKSPSAGFDKLYSVFKAANDSSTMFGQNMTFCNPTAKGYFQATATNTGNANFTNLYQTICLYYTKLANDYTGPLTSFTLQNLSNDFTLLSIDLLKLDSVIQSFPQ*
Ga0070707_10000004856	F008485	GAGG	LGKLQTPKENAEATLLALKEFRRYLEGLEKDLSRTSKKYSNREVAQGVGFVAAGIHEALNYLEIVKKVIVKTERVVAKRNASTENATLPSGPS*
Ga0070707_10000004865	F008873	AGTAG	MTERKKEDEKKPVKLAPFVEPQLFVAVEEANRRLKEIMKVTDPTTGLYRSIQRITEVSEMMLRRQDQLRKLYEPSESVRKYLERIRQLVEQLTRTKMDELPSMSRTLIPQLEGEVSGYVETFERALAEKEKEIEALKAELEALKSKTKNQHPV*
Ga0070707_10000004869	F000611	N/A	MNFPTYVFATVNPGRATKVVDELKRNSQIDIIAPVSGRYDLVLRLKPNTPHNIYQTVKEIREISDVRTTDTHTGFDGMQPTRKLESQMALGVSVLTCEHNTSESIIKQLSNIPGFIEASTVPGQFDIVALWQAKTSEEIVKNSVERVTTLPGIFKSETLLAYAPFFKA*
Ga0070707_10000004874	F000186	N/A	MSGQRSDWRERLHANPSRMEQELAFNLENDRIHYLTQVEIPITTVDFYFPIEPRPLIVFVDGRVHLKTSQLTKDEELRGLLRKRGYRILELYYDGYSDKRRDELYEEIMYTLGKE*
Ga0070707_10000004879	F036188	GGTGG	LLQDRQRSGGKISPGLLREARLRQRDGEWLSSAKSVVLRRYRGKYVAIRNKRVIAASTTMKGLYAKIDKLNPGMVLITKVEKPTLLVYVQLH*
Ga0070707_10000004887	F009674	N/A	LNELVRDLVRQMLRLQWDDATIVFHLKSAKIRNARKILDSVLDEAKQEAIARLNV*
Ga0070707_10000004897	F027476	N/A	MVGWGFAFGRGIVVLLWSIVWAIVAGIIGALIIGGSLTSLISNPTAVASNPTGVVTGFLAASFLGIFLIIFIAVIGLYATIVKVAVDGALSQLEKSGQYNRSSYATASMGSQPTMVAPAMRKFCANCGNALPGGTAKCSNCGASL*