Scaffold Ga0070707_100000044

Overview

Basic Information

• Taxon OID: 3300005468
• Scaffold ID: Ga0070707_100000044
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 108715
• Total Scaffold Genes: 119
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 76 (63.87%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023685	Metagenome	209	Y
F024083	Metagenome	207	Y
F024399	Metagenome / Metatranscriptome	206	Y
F035564	Metagenome	172	N
F045957	Metagenome	152	Y
F069273	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070707_100000044110	F045957	GGA	VPVTERERLAAAGRAAGLRLRAGDVAALLPAWKRYLALVEELRAAVAPEDPDAGG*
Ga0070707_100000044114	F024083	GGAG	MSSIATLRWASTLGTVLLALLAGGVVATSPKPSQAPLHPSVTLLPNDATVQSKSYVS*
Ga0070707_10000004419	F024399	AGG	MAKLIARVDPTLEDFIEAAARAEGVAIDEYAGALLQVGWDAVFGFRRSDRFPRAASASRQAELRARFVELRAGLPHGPPVNGQDTDRG*
Ga0070707_10000004460	F035564	AGGAGG	MDDSEFLNLLTHIHDEVLEMVKEQHPAHEQFAAWLLGQIEGRLRMRIGTVKT*
Ga0070707_10000004472	F069273	AGGAGG	MMNHRHLSGPAALSQEAGRRRLWLLVGAALLAAVLVGSATRSITVGAAREGDPQVSGAGKTIIEGGTGAPAYIPVTTVLAFHANGKGGDFECLALAPNAGSGAPESGQFEVNAMYVTGKVTSVQVSDGTAVLSGTAVVTGLGAGPSQAFTFTVRAGGPGTTATLVVSGLTFHEILLEGQVKVD*
Ga0070707_10000004488	F023685	AGG	MVHALRRAGGYLRSGGTLISIRPHRTWRPSIAIVADRPRLPVLTLVNPAFERNLEAADLALERVVDEGSFFLAGVRSARFRTYLARPSQMRTYLELINPPRPRFPRGGRARLYEMWGWAPPGSRIEVTESLVVNALRRR*