Scaffold Ga0070707_100000033

Overview

Basic Information

• Taxon OID: 3300005468
• Scaffold ID: Ga0070707_100000033
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 118390
• Total Scaffold Genes: 118
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 77 (65.25%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008486	Metagenome / Metatranscriptome	332	Y
F011479	Metagenome / Metatranscriptome	290	Y
F017116	Metagenome	242	Y
F020766	Metagenome / Metatranscriptome	222	Y
F023557	Metagenome	209	Y
F024510	Metagenome	205	N
F029700	Metagenome / Metatranscriptome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070707_100000033100	F024510	N/A	LRLTIEAYGPWISKELDKQLRSTRTKAAKLVDEAKRAVSEAESFYQDLARKGDRDMATKKDAASYRAARVIAHGAHEAAARVKEIVIPSETSWESLKIVKDGLSVASRSIRDLRDSTARELSGFYILDMRSFGGAMDRIAKNDERLSSFLEGEGSRLQRARTITGIVESIAAARIELDEKMKELDTVRKEMELLKLSESELASKVDQLETNPNLREVLDIEKELRKESRAFRAETLAHLQRPLRRLADLGQRGEYPLGSDERDALAAFVKSPYKTFLSKSTGEYLAKILENMKKAIDSGKMEFKPKKTGRVSVQLSQLIGTTHLAQKQEKGRHLLARRRELLRSADCKDKYEHRKTLLIKIEERKRQELEVSEKIRSASSMTESVNRRLGELLKQAETKTQEYVGQKVELEGISL*
Ga0070707_10000003352	F029700	N/A	MPVLKVPNRTIAAQIPIIESRIPKPDELVVLSKPLLQATIRIGELLKDCSAKWAFAGDLGEILFGVNVEPDHITIITTSAGCDDISKKLTPFLVQAPRITERRVKRSAEINLKPLPINVRSYSSSFNIQGQKLDVHGDLQIKVGDWDWGDSIDFEPEYVYVVGVKVPAAPLELKKELYRGLGWYDRVSKIHAAMARRHHKIV*
Ga0070707_1000000337	F008486	N/A	VGDNPEALLLSVLYAEAGIPNYLVGPFGDDGRTHQNRPGIEEALWLLGIFAKSGRIRVIPDYHQLPLSQVTTLILATHASTSGHTSGLEMTVRNLAGGLAPGTTVAFTGLCRPHYTASIVKSTIEKHGGVKVGADINLCYMPLFWAGEKIREFKERPKVLARFECALANDFQEELLRVFPTLSLTSKVEVAEASGLFSAVNREVARALELELAKMSECNGINYDEVSELCRGDWATPLSAASSSDRGSIGTAIALSSLHRKKAPRLVRAAHSTNEEYHSQIVEMIRRALNHCGQPFRRSRIAILGTDGLLRNSWSRPESPAIIESLRKRGAQITLYPAETGSHPWVQMLGENARVENSLLRAVAKANCTLVALPKSSATELDAEQIATEMNRPGAICDLTRVLQASNVERAGLFYTTIGRGTLDG*
Ga0070707_10000003375	F020766	N/A	LFLFAGFPVVDLLTGGIVLFAIMAGAGIVPLIIAFRVKVRSLKILSLLLGLFAVVHGFYHLASGFQQEFLADVVFEPISLVLLVGLGAYYSKVGVR*
Ga0070707_10000003376	F017116	AGGTGG	MALDDIISVFETISLVLILVAFAIFARLAIKGKSLGSFRFQLSIFLLIWVLSEIPHIAGSLGLISTAAYSDIGLYLHATSMAVFALFVGWRSIKFATLPIPPTGSTSVATEPPRRIKG*
Ga0070707_10000003377	F011479	GAG	VSESVTETLSKILGGDTWKAINFFFDMKTIAREPEDFAALLAKVFGATSNVLQKKIGETILGKVGAVQQTSSSLDFRQILRLAKAKFPRRPLPDQLSP*
Ga0070707_10000003397	F023557	GGGGG	MNTRAISYELIVFVSQWGLMLLGFGILTKLVAPLDLLNPSLSLGLYFDAAIKALIALVLSVAWLFIWDRQVRLFFRKRGK*