Scaffold Ga0070707_100000030

Overview

Basic Information

• Taxon OID: 3300005468
• Scaffold ID: Ga0070707_100000030
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 122924
• Total Scaffold Genes: 140
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 100 (71.43%)
• Novel Protein Genes: 19
• Novel Protein Genes with Ribosome Binding Sites (RBS): 14 (73.68%)
• Associated Families: 19

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005447	Metagenome / Metatranscriptome	400	Y
F006299	Metagenome / Metatranscriptome	376	Y
F006466	Metagenome	372	Y
F008609	Metagenome / Metatranscriptome	330	Y
F009133	Metagenome	322	Y
F010312	Metagenome	305	N
F010607	Metagenome / Metatranscriptome	301	N
F012762	Metagenome	277	Y
F013280	Metagenome / Metatranscriptome	272	Y
F014110	Metagenome / Metatranscriptome	265	Y
F019111	Metagenome	231	Y
F022166	Metagenome	215	Y
F023559	Metagenome / Metatranscriptome	209	N
F028762	Metagenome / Metatranscriptome	190	N
F035230	Metagenome / Metatranscriptome	172	N
F035707	Metagenome / Metatranscriptome	171	N
F039071	Metagenome	164	Y
F073377	Metagenome / Metatranscriptome	120	Y
F081135	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070707_100000030128	F035707	GGA	LSSSKPSRRAKSKTFTLHLDTDTIERLTTEAEEQDLSVNVIANRALRKYVEWEVVSEKFQVVSTFSSLLTKLMTWVPEEEARELGRSQWRHEWRTVATSYYQDHGIEPRIRILELFGRYGRRFQFDQATIGSTRILTLLHGMGRKWSLFYEGMLEAMLSEALESGGTLETMLSESLEGKAKRFSLTSTDNQVVAEIALDPLKSLQPPVDDIFKRIRVPLSRRDRQTYRSSDLSPIA*
Ga0070707_100000030133	F005447	GAG	MLNRKRLVVFALVFAMFLAAIPSSTPRVYGAAAPCNPLKKCSIAILSPGGALNTNHTVNPSFLVSFLVHNFTLIQPGQTSDVNTTSAGNNEGHIHVWVDGQYVTIWTSTNGIPLSLAPGSHTIRLDLVNDLHQTFNPGINATTTVNVLDPNAQLQSTANNAQGNASNAMYYSLGALILSLISVILVAYVAFKPKPKP*
Ga0070707_10000003015	F039071	GAGG	MTEKTTGQESRDDLLLSIRRLAKIVLDKLEQGSSEGTLDQAQIRLLGSIATRSHALWQEALNPRPRRGLRREMREVEDRLADQHTGQ*
Ga0070707_10000003016	F019111	GGA	VSRNLVERNKHDENELRSQIIEQLEQSLAMSREMMMNIKLDPKTRERWTQLHTNTSQVLNTVLRDKQYEDWEKRLKELEAAGHIPRKTTSPTINPTDNSSRSVTI*
Ga0070707_10000003024	F073377	GGA	MRKMALFGTVMALVLALAIAVPVFGAPPTGIPPSHPDQGHRPAPPLATGTTLTISGSGTAFKIGNRSITESASISLTATVIKSSPGRGMLNFTGGTLTIGSNTYTVVSGHGMINYHSDKMILHLVVKNSAGDKFHLNLFGVHAKASSTTAFTVDFRMPQSKLAHLWFLKFSSASVTPK*
Ga0070707_10000003032	F010607	AGG	MVKVDRYRVVARFARLFPDPAVFEDQDRLVERYLVHSGLPKEKAIYLYQPEGEINPVDDSGKPAVASGAASFRFQGKNIMAEFMPNASLTLEYYDFGTGLSSEDHSRLWKKQRVGEMSFQLRDFGHETQGLNLTNVSELYEMMKKQSQTTSLSSIELAKMPENTFQVTVAYLKSQLRKSSEQDGLEVEVYAARDLSASEKDSLEKRLTRPSTGSTVYVILSKPSQLMKIETS*
Ga0070707_10000003034	F023559	N/A	MASLKKRIPKPDLSKYDSSPLYLYTEKDSLNRVTVLKETAKDIYLIAGRYSGVEGDARLYTPLTDEEKGEIERNLRGSHKDALINHL*
Ga0070707_10000003035	F008609	N/A	MNRTLLVLGIVLIILGVAGYYVTSQTNLIGGRTHSTYPLGGIALAVLGALIAVGGVMMGKAGSKTSNQFKCAKCGATFGSQVALDQHSKDKHKI*
Ga0070707_10000003054	F035230	GAGG	MINEGDDLRIVVPKSYFQRLGLERGETLLVTVEEDRSRAKRKHSKTRVHRVHKHN*
Ga0070707_10000003057	F022166	AGGA	LKAKLPRVNFLGVIAGILALISTLLPWWGITATGFGSTTSSIWGFFGGPSRNPDVNNASGFSNTIVTYSPIILALVLLTTALAIAGSFTTRFRFLAGGLVTSIAAVVSYAELVSYTVSNNCQGVACITSSTGSESAFGLTLTWGFQLGFYLFIAATILVVIGLVFHQTLTHREARAEASPKK*
Ga0070707_10000003062	F009133	GGAG	MSSDVARLLSKSVDDLYEELGRSLITPDYPSAGSVTRQNAVQRGRSFISGSLEKLRAKICVDWRYCSRRSEYGDFQSLAYAVAPLVSSVVGIPVSTAMIVAIILIKSGLEKLCNCP*
Ga0070707_10000003071	F081135	GGA	MVVGLLDKTSFGSSTLTTPQLAIATTEKIKEVYFTLELWYFSMRQKVRLLLRKAASMIEYDLLEVVNEFVEFYGEFVEKVAEETLQLVAKGDLASLEGEREGFSTFKTRLAELRGRANAFLQSLRDDGLPVSDTKVRALELDPWFKPGTAISEQKESPT*
Ga0070707_10000003074	F028762	AGGAG	MSEALERQERWKQQKEEADRQRMGGAYIQGFIETAAAIVDEEPLFSKGYWKCASGCKPFGFGLAKTPRECPSCHKQLILWVPGP*
Ga0070707_10000003083	F006299	N/A	MTVPAEVVLREVPEIVEFNQLRGRTATEALTELVEEFGVVYVTAMTRQGCSGCETQKPLFKTLAEKLTGENTGRVRFRSLHVNYQGGDRRESWSSKGVFGHAAYPTYMIHVKSHVGPLEIYRSVYPPMEELEKQIKESFELADFYKTEAENESRLISERP*
Ga0070707_10000003084	F014110	N/A	MKAISLKPKTGSKSIGKTKKEQQIVDLGKLPDKVGVAVDFLREHVKGAKGRVSTKGNQIQVEGLKHKEVKLLLHKFLRHNGLDDHRVLSQSGTLEIVPQHLVVHSRPQEGTPPPASATMPYLFPGASTSMPTSRKSRKS*
Ga0070707_10000003086	F010312	GGA	MASPKKELMMLRVFRLTLPAALLISLTWMTLFTDAARQAVINSLGANANIIIFILGLFLVVGLYWVMGVYERKILYENHRSRPAF*
Ga0070707_10000003089	F012762	AGGAG	LPASLDEDPSLGVIDNFPTVLHARASFSFDINPESLQKVLVSALASLQSNPKSREITLADRDGYLKGQLFFKLGVGNGDAFDVLDYKEEERVLQRIENLGPWHVLDLVFQLHYSVNDDIRHRVHEDHYLLRLVFQPGRVEVLVHHLKGVRRVEPDELIRLLIQELNVELVRKRYGQLELEVVDST*
Ga0070707_10000003092	F013280	AGAAG	LKTVRLLIWSAIAYAVLLVLARGVFPSESTPTISLAGIPLIVVVLIIARDLARKSTTPSKKIDAVASKGFQGNPVQFLSGQFRVAATASNSYFEKVVRARLKEILTAKIAIETGQETGIVRRILSDPKRGPMLLQDDSLYRMLYGPTPRAGLARMNMIRDAIDLIGAWKS*
Ga0070707_10000003095	F006466	N/A	MAGVTLVGTAGMLVRNRTAVFTASAALLLVIIWSKIADDLYRLPGPDSAVLLLQFMLVIFLMDASTTVLTFDSSIKELRGKTDELSTVARMRVTKWERVQLLSLGKLTLASFGLSLGLLILGGLISVSVNQIAFSGVLALAAVVAIFVLITFRREPEEGGRSAQQFPLAHSS*