Scaffold Ga0070707_100000019

Overview

Basic Information

• Taxon OID: 3300005468
• Scaffold ID: Ga0070707_100000019
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 132161
• Total Scaffold Genes: 152
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 108 (71.05%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Associated Families: 15

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000186	Metagenome	1702	Y
F002368	Metagenome / Metatranscriptome	566	Y
F005385	Metagenome / Metatranscriptome	402	Y
F005698	Metagenome / Metatranscriptome	392	Y
F006213	Metagenome / Metatranscriptome	378	N
F007968	Metagenome / Metatranscriptome	341	N
F008355	Metagenome / Metatranscriptome	334	Y
F009392	Metagenome / Metatranscriptome	318	Y
F013177	Metagenome	273	N
F013287	Metagenome / Metatranscriptome	272	N
F015715	Metagenome	252	N
F031048	Metagenome	183	Y
F040029	Metagenome / Metatranscriptome	162	Y
F045649	Metagenome	152	N
F069926	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070707_100000019100	F000186	N/A	MSSQRSDWRERLHANPSRMEQELAIKLQEDGIRYQTQVEIPVTTADFYFPMQSRPLLVFVDGRVHLGKTQMIKDEELRSLLRKRGYRILEVFYDGYSDKKRDQLYKEIRNCLLTSSS*
Ga0070707_100000019106	F008355	AGGAGG	LKSLRWTAVGLLLLTGIIDFYYGNSNAGFYENLWYVTGGIYIFAAIIIAANIEPHFSQLTVFAYSLFLLSVWATVALETGTGLDAVAYADKAVEAILAVNMVLLFRSSRISINP*
Ga0070707_100000019123	F005698	AGAAGG	VKLFGIAGFLLALVGGALIGYSALTAGGLSPFSLFLRLFEALLALGAIIAGVIIYTGPMRFGGILAVIGGIILLLLTSFATPAILVFVAGVIGLIGAAIKPPWWKFWKR*
Ga0070707_100000019132	F015715	AGGA	MDKQATIRTIRASYKIDQVENGWTVSTSDGNMFVFADSRELAEWFCMVVGVPLDEKKPKEDPLELEIRKLVKSYNLVAEDIDKHFVAGHVRQ*
Ga0070707_10000001914	F009392	GAGG	LELEYVRLAPGFAREVLEVYENWEGKNKVPIKLRELMMVIEIEVNKLYERGSWDPAATMPKPPTLKDTKLG*
Ga0070707_100000019143	F045649	AGGAGG	LTGSRIILRLALGVLCGVVLVLLPAVFSAGPTAVPSTSSTQNFGRASQPATLAPAAPSFFGFNSATLGGLSLLTIILFIFLPSTIFSILVRRWAEKKAHEYLE*
Ga0070707_100000019144	F013177	GAG	LSTDHQPPRIFFNILGGSLTLLSVQLPWMTINGTYPISVEFGGIFAVMFYWALAGAILSFLSRFGGAMTLVGLIGFMGEPYISYRLANPGLGLLLALTGAIMTFAGVRWSIPSGMVRGHEIVGGVLYSVGFLIILTVVVSSFVYGGLFSTGSGQLIVAAPLLLIGVFMTGLGLKLFLTPERRQGLSAF*
Ga0070707_100000019147	F005385	GAG	MESRKRRRKRSKRLTSSRYKIRVRYKYHYYRWINTKDYGSFKDIYEKYKDKGYSFWCADLPPEFSSQDGTWTGYRLDGDKTHTASTLKRYGRHKAWVDSSYKFEGKPVILVYNASR*
Ga0070707_100000019148	F007968	GAGG	MRYILTVDFEDDIDIESFMHFVAYHSKRLKCASKDVFIRLAHEWEKQLVNPHESTNPNGVKKEKKKTLKETNE*
Ga0070707_100000019149	F006213	GGAG	MRGMPHTVKVERHQNELVVHVALLHGPDAKLPGGVLLHTEGWVDIGYGLKMYLVIGSGNITYHPKQIEEKKSLLQRLFSKKQQPLLEDKGTAS*
Ga0070707_10000001925	F013287	GGAG	MGLSVKPVTIRDETYLKVPKDVGELLRVMASKICSVNFRIDEKECTLIYSFAKSVPDLREEPSDPRLVLAD*
Ga0070707_10000001959	F069926	GAG	MIGITVLAIVLSSLSLTYWLDPGRVIWTKDGTVTAVHQYSDPNGGTNWNVLVYIYQQNDMGYLVNTGYVPLNGLGTQGHGNYCWDDGTSNCLNAPLSFRLNETLSVAALNNGNFMLKNRQL*
Ga0070707_10000001961	F031048	GAG	MEALKHTLDLKPKKQVRQVLLLVSTSIIIITSLLAYNRITYEFPLAVGNTGQSALGPPTSAGVGILYAMIVVAAILGFVTVLSIFGSLRNVSDRISEIVVGEPSPKDSVLRSQEKDEWEDSSTKKEHRATDDEILRALLLSKDKKKATTE*
Ga0070707_10000001962	F040029	AGCAGG	VALAPEFFVLLGVSIFLAASIVSALLDHYLPSILQYLFQGAAGAGLGELLLGQGLNGPTRVWAGIVYLSFALSSLVGMNIRLAIVRRRMNIASIFSQMLTVPVVMISALLLSSFLENGGELVFSTASILTIGTAVLVANLSIFGLLREYSRQGTVGSGGLVSLPNSPLPTLTGNVSPGFAPHPLSGQEEDWEEAPTTKED*
Ga0070707_10000001963	F002368	N/A	MVIQLTPTKIKGSKYLLIPKDLAQLLEIDDKSILNLTIEETDQGQRLIYSIRDKSSSPVQG*