Scaffold Ga0070707_100000017

Overview

Basic Information

• Taxon OID: 3300005468
• Scaffold ID: Ga0070707_100000017
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 141660
• Total Scaffold Genes: 149
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 97 (65.10%)
• Novel Protein Genes: 19
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (47.37%)
• Associated Families: 19

Taxonomy: All Organisms → cellular organisms → Archaea (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001999	Metagenome / Metatranscriptome	606	Y
F005560	Metagenome / Metatranscriptome	396	N
F005976	Metagenome	384	Y
F006887	Metagenome / Metatranscriptome	362	Y
F009256	Metagenome / Metatranscriptome	320	Y
F009677	Metagenome / Metatranscriptome	314	N
F009738	Metagenome / Metatranscriptome	313	N
F011379	Metagenome	291	Y
F011380	Metagenome	291	Y
F013282	Metagenome / Metatranscriptome	272	N
F014247	Metagenome	264	Y
F019975	Metagenome / Metatranscriptome	226	N
F024274	Metagenome	206	N
F024764	Metagenome / Metatranscriptome	204	Y
F035699	Metagenome / Metatranscriptome	171	N
F039574	Metagenome	163	N
F042272	Metagenome	158	N
F054748	Metagenome / Metatranscriptome	139	N
F085527	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070707_100000017112	F006887	GGAG	LCRKYDVDRRRVFLEYSSKPPPPIKGGKFGYYDGLLSQREKDGNVEFLITVFRIARDPLLTLGHEFAHLVDDLKSTKIHKPLGPPEDSREREFDNQARRNLDQFLAQRKIDG*
Ga0070707_100000017123	F009738	GGAGG	LPLTREMSKQTPKQQEKEETAEASSFRPVGLSIASFFYALSGIYYLAFPIVAQDTGAWHLYAIGGASLLGAYGVFAMTKWGLWLGLLLFPLQIVAPASTLLTVLSYPGVWQQPIAIAFVASLFVLMFFASLTFLLVLDKRRRFD*
Ga0070707_100000017129	F039574	N/A	MNYPYAAWRRILFVAILVVIIVIGLAPATTQGRVVVRFSGLASSSVINHVFIGFTQIALHQTGYLNSSGWVIISQSFPILDLSSNQTIPPTATSTPIHSGRYDQVRVAFSNSTLVRAGLRLAMSAPPMLSANVTLPVPPNGIADIMLTVGFDYSTLFSTPPSITLVLMRVSTV*
Ga0070707_100000017141	F009256	N/A	MSERISVSIELEFFNKYLFNALKRSLSNATPKRKLDIIYYYSRDPRVKFSIALNGFSSGAAAAHPQWSTVFNNIQNMRQYLR*
Ga0070707_10000001716	F001999	GAG	MAYLLAFGLRKIEQERPELASDQKYAELKGQLLQDADGHFREIQATYATVLKTQCHCGGPLEPVDHDFGRSGGMIYDSVVAKCRSCGSTQSFQFPKEGFISEARSAMALRDYLQRTYGLDYAGVAMSELQNRSVGGS*
Ga0070707_10000001719	F042272	N/A	MVPVIALALPYLGGLRLRTIDVGHFHTTILSPAVGISGGFTLLYSIETQPTISLLIRWSLLFVGVCWCFAIGCSLAADPANRLIVRNVMSEKTSSKLISSKIWLQDAQGQFREV*
Ga0070707_10000001722	F011380	GGAGG	VQHQFGERIDLLLQKSVRAASRRVKERQKEAREKGMHQEPPSFEEFNALVNELMENGKRADLDRLRNLSMKELFEQTWTQKLRNYAIQKQVRDAYDSLVRRSKRDS*
Ga0070707_10000001744	F011379	GGA	MPLKIIHPDHTEVMGTGLVLLSNPHVTTSKRELYTGQIVEEAALLSKSWAIIAKEKKQHENPDGAQTVEPSLDKTVHDFVKEYGIKCVITISGAPEPGLTIKSQREASESEEILDIIRSGLEPHFSINPHVDQSGNRVTGLQGNDRLADYSSAQSVQVIQIELGPEERSFRKDQIVNSLADIVGLVNAKFGFSVSGQEGSGGALD*
Ga0070707_10000001748	F024274	N/A	MQVPKKHIPVVGILGLVVVAAAGGGIYYYQFVLSHATVTYAVSHRLVFMTAIVQEEGGFHITNTDFLNQTNLPVFNASAGVNFASFKAGVNYTKYQGESDNKTIDAHVGDTITFYIYGENATGTDPNLHLSKGHGFDILGSGSFSVVSSPNSPGILGGTSPSNPPIPFGKWYSVTVTFNSAGTFTYQCSVVCSPLHGNMNGQIVVT*
Ga0070707_10000001765	F019975	N/A	VKRLTFSGIPHLPFQEFTVSSLEALLNILKKARIKDSEIEVSTSEESQHTTCSKPIIHVLVMTAKGEGAGEHKDLAALYQYCPGCGSAVRVL*
Ga0070707_10000001767	F035699	N/A	MPKKNGIPKSLLADIKSVKTRLSGLERPKAILADIGGLKSRLANLEKAHTSINKELKNVSDALKRQESTIAQLGKKPAKKEKRKPSEYNLFLKDKMSAGMSMIDAVKAWKEKEGGSSSSSMKQPGQDWQSPSQQY*
Ga0070707_10000001768	F024764	N/A	MNSKKRAARLAKKTTQYLVVLVLLVAIAGSATYALMSDTSIHGLTVRFYNVTRSCTGPVSAPVLTFNFSQVVVYSTASLETSLSHVQFTMSADGTLIGGQSAQDSKFGPGQSVAYPLTFTNSTLDPHSQPLKSNIFLAVTALVSAGLYSSTTTASDSELVTFSGSPC*
Ga0070707_10000001772	F013282	GGAGG	MTDKLAGKDDSQRLLGYVESVAKESRKALTVEFNEKHKGIPFNTTAKVLSDSLIAWFSRRDKNLKIKAESAADAKLGEVRAVFFGETKNVRFRVRADATFSLSGGLVNSPSYLKELNVSIDRKV*
Ga0070707_10000001774	F085527	GGAGG	MVLIVILMSAIVYVWVVPAFTSQANQDNAGAAYSEKFETVRAQFATYVVSIPETVAACGSQDTNVGCNPSSFFTCGGSITTPHTGDVVVPVNGVCLVTSTVNGNVYVFSGGNLTVIGGTINGGLEVDSALTVTLTNASVSGYSGLYNAQSVSITGSRFNTSGNLGICTDACGAAMYAGGRGYFSMTNSNVTGQVENEVGHNTIVNNNHITGRLEIESADLGQIINNVVGSLDLDQNGTIVIAGNIVNGPALYGTNGWCGTGNNQISGSTTGTCIGNVEVDVRNTGATPVKFLQVYMTNIPLAGGLSWQLASGNPTQCGNAQAATCTLLPIIIPVGDMAEITMGWTPPSGAFPLPWNYIYFIFVSSHQNYVDGYLYFQKGLGMPLQSRLEQRTCPPCY*
Ga0070707_10000001776	F014247	N/A	MASSRFSRNLFWSGLWIYSVATGLASMIFMAWAFYVETTGRGALFIEPNRVLAAGELATVATGMMALLVLFFRGLSQKEEHLTESSRE*
Ga0070707_10000001777	F005976	GGA	LRVNILIVGGLIVAMSILFLYSVIAASILGFILGGLNIIIGLVTPRASGVSVPDDQQAPLKLLLDKGVIRTRIYTVAFSERKLVLRKLGSANLTVVTALLLALVGAALASYFGIVVGGVTAFSLQEFVTQRRRDRISKGNPLEPSGSGDLEYSYDEIEQIRLLGNRLQVNFKDRVVRIAISRRYPRIMGPVLGKIIPAKIQSDALPSGRVP*
Ga0070707_10000001789	F009677	N/A	VIGWLNKRRWPLVALALILLTSTVASASAAAPNPQESVSLYAGNKLNISSTQQAIKSVVVRGNLTAATIANVTYPAKNFSLSTNSTQLYTLNVWLSYPSTYTTSIIINDPAAGSNNLYTSYYVSAGDLNLTIFADFQPAPSSGGGVPLSWSSFFGWFSQFGNAFPIWIKILYTVLGAQFAFVGYRWIKFEDEKRRIEGHLPPLDRGNRIYMWIDVVFRTLLAGFVISLALMLGETVIITVAQYLFFVTLNLFPLVDLFSLFFVAVLGLIIYLAREGLDKFLDLKPMMED*
Ga0070707_10000001790	F005560	N/A	VTAVASGTTTYKRMFLRWEILRGWLPAIVFAAISVAIELLYFTYMVGRGMMDEAFTISLGALKIPLSIALFFSLANAIVLLTLWMSVFENTAFVMAGPDRRVRRILYPLRMVKAAAIVLTPFTVVLFTPYIVESSWFISAVASVANSNPSLSQTAINFYSWSFGLARMDYSVKFVASQLSAAFSSAVVSGLLLWRVKGTRNLMLALRRKK*
Ga0070707_10000001791	F054748	GGA	MTTDDTQTVDAPSKRLTEMILKGEDQDAARIAGEIATGKSETNDIVDAISETMNIVADLHEVERYTGQQVESCERAAESALNAIRPGLRVEQRRISGKVMVTSLYGDPHRFDKTLLLTMLEMGGFSALDGGEELSPEEIVRTVKVEKPDVLAIPLVTASSVNDLMRTRSLLANSGAKTKLVTYGRGVAKLPDDSQLTAAEEDSLSILSRIAEILIAR*