Scaffold Ga0070706_100306838

Overview

Basic Information

• Taxon OID: 3300005467
• Scaffold ID: Ga0070706_100306838
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1481
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044976	Metagenome	153	Y
F046534	Metagenome / Metatranscriptome	151	Y
F086812	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070706_1003068381	F086812	N/A	MPSSDDQHRLNSRKRREIDRIGQKFHFNLAPSPSSLDEITTGPKFVSLTDFIEHFDWAYSDLDIVDRREIKALDAENFWRYIGKSEVPLKEPGHLSAVTVAKGIEYGVVRREIGKEQR*
Ga0070706_1003068382	F044976	N/A	MNRNNPQPRVPTLKDLYGPKESSLPWEEHEAEIVRFWTDSGDCWGFLFHHVSGTYYSAKERRLLIDWPLGTIVVTGPKTLEFYEQFSNHRAALIRPDGKDIVSVKMHLNSEGLAEKDAELATPKIGSEDLSL*
Ga0070706_1003068383	F046534	GAG	MNHSTSNDSQIASGGGPSEPASTLTDLQVKAYENRVRERLIAKYPTRTPAEARQLEKQILKLVQFYAEGRILLQGDPSDRIRRDHRLQGKEQTREIDITDNH*