Scaffold Ga0070706_100119576

Overview

Basic Information

• Taxon OID: 3300005467
• Scaffold ID: Ga0070706_100119576
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2455
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002203	Metagenome / Metatranscriptome	584	N
F006088	Metagenome / Metatranscriptome	382	Y
F006226	Metagenome / Metatranscriptome	378	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070706_1001195761	F002203	N/A	AQPDRLDALFNHPAENLSVPSRVRQRYAILAYYIQLLNLQGPTRSRSEDIAAAIKTYQLVGESIARSDARFEREVQASFVQSLRQAFSKSQEELSAFFRQVGIDPRLLAASVIEESLASNMLFYGAETRVTNVNDMVWCCFPFCFKRPT*
Ga0070706_1001195763	F006088	AGGA	MSSERVDCRRKADDARQRAAQATEPFMRSAYEKVAEHWMLLARLDYLVYDETITKQSQDRDG*
Ga0070706_1001195764	F006226	GGGGG	MNTAMARRLALGDRVVWISKDNYQPSGPGTITRITAHQVEVLWEDETARRYRRAQLHNLRHRKLVCELHEARGA*