Scaffold Ga0070706_100089550

Overview

Basic Information

• Taxon OID: 3300005467
• Scaffold ID: Ga0070706_100089550
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2853
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000604	Metagenome / Metatranscriptome	994	Y
F008220	Metagenome / Metatranscriptome	337	Y
F023679	Metagenome / Metatranscriptome	209	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070706_1000895502	F008220	GGGGG	MGSVDVLRNKAEEYLEKARAVSDRQRARLLLVQAHNHLKCAEETEAQQLSARR*
Ga0070706_1000895503	F023679	GAG	MVTKECFACEKVTSHEHLHDCTRGLPETHIADSERFVCVLCGHVTFAGSEGASRFPFTLDKVAAGR*
Ga0070706_1000895504	F000604	AGGAGG	LAHSTWRAARLAVSIYLAIGTCAVTAQENRPGRATFAEMIAYARLAVGACERLAPDADGFYALALMRLIKPPLTEKEIVAKEKEVRRLRDRLGLRKWCQRYAGEMAQARILVEALRRQN*